Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

41126 18 + 77781889 - 77782353 2 114

TTG ...

LRM ...

41128 1 + 172318841 - 172318975 1 135

TTG ...

LGP ...

41131 18 + 35613396 - 35616214 2 123

ATG ...

MNG ...

41133 18 + 9959260 - 9960489 2 60

ATG ...

MKK ...

41135 1 - 153483719 - 153483829 1 111

CTG ...

LYA ...

41137 18 + 60545761 - 60546252 2 93

TTG ...

LGP ...

41140 18 + 67390768 - 67391337 2 60

TTG ...

LCT ...

41144 18 + 80207263 - 80210100 2 120

GTG ...

VVV ...

41146 1 + 57409936 - 57410016 1 81

CTG ...

LSQ ...

41149 18 - 34946021 - 34946518 2 39

TTG ...

LSR ...

41151 18 + 77781811 - 77782353 2 192

TTG ...

LKN ...

41153 18 - 46734450 - 46737553 4 282

TTG ...

LSF ...

41155 18 + 61575504 - 61576532 2 72

CTG ...

LPD ...

41157 18 - 34940908 - 34942013 2 186

CTG ...

LPS ...

41159 18 + 76944461 - 76951119 2 78

ATG ...

MWM ...

41161 1 - 119421346 - 119421381 1 36

ATG ...

MPR ...

41163 18 + 35582819 - 35583905 2 57

CTG ...

LRN ...

41165 18 - 56526953 - 56531601 4 243

GTG ...

VCS ...

41167 18 + 34845657 - 34845996 2 84

CTG ...

LPM ...

41170 18 + 34846152 - 34846469 3 237

CTG ...

LGP ...

41172 18 - 76977386 - 76978586 3 297

ATG ...

MKR ...

41174 18 + 77781856 - 77782353 2 147

TTG ...

LTN ...

41176 18 - 65991664 - 65993095 2 45

CTG ...

LTS ...

41178 18 + 68300414 - 68305815 2 48

ATG ...

MTV ...

41180 18 + 60776980 - 60777874 2 174

ATG ...

MSP ...

41194 1 - 135122267 - 135122551 1 285

CTG ...

LRA ...

41229 19 - 34524743 - 34524808 1 66

TTG ...

LGS ...

41232 19 + 29047879 - 29048034 1 156

CTG ...

LRA ...

41235 19 + 8947333 - 8947458 1 126

GTG ...

VLC ...

41238 19 - 5688371 - 5688472 1 102

ATG ...

MPP ...

41241 19 + 12461163 - 12461204 1 42

ATG ...

MLR ...

41243 19 - 4009282 - 4009461 1 180

GTG ...

VFV ...

41246 19 + 8742131 - 8742196 1 66

CTG ...

LRV ...

41249 19 - 60226464 - 60226529 1 66

CTG ...

LPK ...

41252 19 - 5907049 - 5907159 1 111

TTG ...

LAS ...

41255 19 + 29047744 - 29048034 1 291

TTG ...

LVM ...

41257 1 + 75144971 - 75145120 1 150

CTG ...

LLW ...

41259 19 + 53140686 - 53140718 1 33

CTG ...

LAK ...

41262 19 + 5368094 - 5368168 1 75

TTG ...

LKA ...

41264 19 - 33391974 - 33392060 1 87

CTG ...

LVV ...

41267 19 + 44931124 - 44931336 1 213

CTG ...

LMV ...

41270 19 + 45047786 - 45047869 1 84

CTG ...

LLS ...

41273 19 + 10895379 - 10895459 1 81

GTG ...

VAR ...

41276 19 + 26776109 - 26776321 1 213

GTG ...

VKV ...

41279 19 + 8841199 - 8841294 1 96

CTG ...

LLS ...

41282 19 + 36857830 - 36858039 1 210

CTG ...

LWQ ...

41285 19 - 47090565 - 47090615 1 51

TTG ...

LLK ...

41288 19 + 5368085 - 5368168 1 84

CTG ...

LLL ...

41290 19 + 10186400 - 10186465 1 66

ATG ...

MTL ...

41293 19 - 10082549 - 10082587 1 39

TTG ...

LAS ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5