Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

42115 19 + 20630783 - 20630824 1 42

GTG ...

VLS ...

42117 19 + 44294098 - 44294190 1 93

CTG ...

LDT ...

42119 19 - 6908082 - 6908135 1 54

CTG ...

LES ...

42121 1 - 164439346 - 164441533 2 114

ATG ...

MTL ...

42123 19 + 21280446 - 21280571 1 126

TTG ...

LFC ...

42125 19 + 6051563 - 6051601 1 39

GTG ...

VLA ...

42127 19 - 10596964 - 10596996 1 33

CTG ...

LQC ...

42130 19 + 6052625 - 6052657 1 33

CTG ...

LQK ...

42133 19 + 3886366 - 3886470 1 105

CTG ...

LNQ ...

42135 19 - 3910894 - 3910935 1 42

TTG ...

LPA ...

42138 19 + 60811858 - 60811938 1 81

TTG ...

LTA ...

42140 19 + 10539729 - 10539788 1 60

CTG ...

LSS ...

42143 19 - 47037251 - 47037313 1 63

CTG ...

LWG ...

42145 1 + 42898509 - 42901107 3 243

GTG ...

VQR ...

42148 19 - 15906926 - 15907060 1 135

GTG ...

VER ...

42150 19 + 53236610 - 53236681 1 72

ATG ...

MRT ...

42153 19 + 60814680 - 60814814 1 135

CTG ...

LLL ...

42156 19 + 29047750 - 29048034 1 285

ATG ...

MRD ...

42158 19 + 8754937 - 8755068 1 132

CTG ...

LDV ...

42160 19 - 7434979 - 7435122 1 144

CTG ...

LAR ...

42162 19 + 8764514 - 8764651 1 138

TTG ...

LSS ...

42164 19 - 8713366 - 8713542 1 177

CTG ...

LAG ...

42166 19 + 44301275 - 44301310 1 36

CTG ...

LGR ...

42168 1 - 180999885 - 181002010 4 231

CTG ...

LMC ...

42170 1 + 74348770 - 74349769 3 201

TTG ...

LKR ...

42172 19 - 41933072 - 41933107 1 36

ATG ...

MAT ...

42175 19 - 44553683 - 44553766 1 84

ATG ...

MAT ...

42177 19 + 10905046 - 10905132 1 87

CTG ...

LTT ...

42180 1 - 86546732 - 86547546 2 69

CTG ...

LVW ...

42183 1 - 184819221 - 184822532 3 243

CTG ...

LIG ...

42185 19 + 46269842 - 46269985 1 144

GTG ...

VFL ...

42187 19 - 6909894 - 6909935 1 42

ATG ...

MQV ...

42189 19 - 47090565 - 47090612 1 48

TTG ...

LKD ...

42191 19 - 5862197 - 5862391 1 195

GTG ...

VLL ...

42194 1 - 52187648 - 52188789 3 258

CTG ...

LCN ...

42197 19 + 20634422 - 20634484 1 63

GTG ...

VVE ...

42199 19 + 4097856 - 4097921 1 66

CTG ...

LPH ...

42201 19 - 34241645 - 34241806 1 162

TTG ...

LPL ...

42203 19 + 20624752 - 20624829 1 78

ATG ...

MGQ ...

42205 19 + 40911084 - 40911125 1 42

CTG ...

LAP ...

42208 19 + 38950341 - 38950388 1 48

TTG ...

LLN ...

42210 19 + 5367161 - 5367214 1 54

CTG ...

LSP ...

42212 19 - 46669113 - 46669331 1 219

CTG ...

LTD ...

42214 19 + 26683815 - 26683937 1 123

CTG ...

LNE ...

42216 1 + 85903086 - 85905307 2 159

TTG ...

LYC ...

42218 19 - 5731252 - 5731281 1 30

TTG ...

LSG ...

42220 19 + 20619985 - 20620026 1 42

ATG ...

MVG ...

42222 1 - 33786505 - 33805367 2 57

ATG ...

MKS ...

42225 19 + 26751896 - 26752045 1 150

GTG ...

VDK ...

42227 19 + 20634425 - 20634484 1 60

GTG ...

VED ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5