Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

40792 18 - 34949038 - 34949115 1 78

GTG ...

VPP ...

40794 18 + 77777573 - 77777605 1 33

CTG ...

LLT ...

40796 18 + 76944449 - 76944535 1 87

CTG ...

LPC ...

40798 18 + 21010735 - 21010785 1 51

ATG ...

MVF ...

40800 18 - 12771248 - 12771391 1 144

CTG ...

LSF ...

40802 18 + 77065334 - 77065417 1 84

GTG ...

VSL ...

40804 18 + 77781826 - 77781984 1 159

CTG ...

LLS ...

40806 1 + 75143013 - 75143132 1 120

CTG ...

LWL ...

40808 18 + 12143009 - 12143071 1 63

CTG ...

LAV ...

40811 18 - 56559177 - 56559281 1 105

CTG ...

LKD ...

40813 18 - 9618984 - 9619082 1 99

TTG ...

LMT ...

40815 18 + 32083421 - 32083462 1 42

CTG ...

LFG ...

40817 1 - 178333894 - 178333947 1 54

GTG ...

VGW ...

40819 18 - 36668592 - 36668753 1 162

GTG ...

VEP ...

40821 18 + 57730879 - 57730941 1 63

CTG ...

LEA ...

40823 1 + 6244912 - 6244983 1 72

TTG ...

LDI ...

40825 18 - 37643281 - 37643364 1 84

ATG ...

MGV ...

40827 18 + 35118938 - 35118985 1 48

TTG ...

LAP ...

40829 18 + 58671296 - 58671331 1 36

TTG ...

LGT ...

40832 18 - 37643281 - 37643322 1 42

CTG ...

LQN ...

40834 18 - 37638549 - 37638611 1 63

CTG ...

LTT ...

40836 18 + 59072319 - 59072450 1 132

TTG ...

LEE ...

40838 1 - 75136395 - 75136580 1 186

GTG ...

VPA ...

40840 18 - 76994390 - 76994464 1 75

CTG ...

LVQ ...

40842 18 - 56526953 - 56531628 4 270

CTG ...

LCS ...

40845 18 - 33438714 - 33442917 3 228

GTG ...

VCA ...

40848 18 + 14731037 - 14757294 2 78

TTG ...

LMM ...

40851 18 + 34845663 - 34845996 2 78

ATG ...

MLQ ...

40853 18 + 31835346 - 31841527 3 228

CTG ...

LTS ...

40855 18 + 23989715 - 23990304 2 144

TTG ...

LGM ...

40857 18 - 6112429 - 6115844 2 42

ATG ...

MKH ...

40862 18 + 35579266 - 35581221 2 105

GTG ...

VLV ...

40864 18 - 6209171 - 6210767 2 114

CTG ...

LHR ...

40866 1 + 172119925 - 172120083 1 159

TTG ...

LVL ...

40868 18 + 32265656 - 32269889 2 213

CTG ...

LVS ...

40871 18 + 60803965 - 60808014 2 153

ATG ...

MNS ...

40873 18 + 77780236 - 77781087 2 171

TTG ...

LKH ...

40875 18 - 34938316 - 34938754 3 249

CTG ...

LCI ...

40877 18 + 60811756 - 60812162 3 177

ATG ...

MLW ...

40879 1 + 153425234 - 153425302 1 69

ATG ...

MPR ...

40881 18 + 80207323 - 80210100 2 60

CTG ...

LYS ...

40884 18 - 34947984 - 34948134 2 63

CTG ...

LLI ...

40886 18 - 34611483 - 34614509 4 216

CTG ...

LTA ...

40889 18 + 14731040 - 14757294 2 75

ATG ...

MMM ...

40891 18 + 35582810 - 35583905 2 66

TTG ...

LIC ...

40893 18 - 46737517 - 46741431 2 66

CTG ...

LQF ...

40896 18 + 68319190 - 68321355 3 102

CTG ...

LKK ...

40899 1 - 93801746 - 93801781 1 36

GTG ...

VLA ...

40901 1 - 172074892 - 172074984 1 93

GTG ...

VTL ...

40903 18 + 77781841 - 77782353 2 162

GTG ...

VYG ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5