Metam
ORF

Logo

ORF Browser

Selected

filters

Database

M.musculus

ORFs

No result matching criteria

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

40689 18 + 14783493 - 14783582 1 90

CTG ...

LRR ...

40691 18 - 34945940 - 34945984 1 45

CTG ...

LLR ...

40693 18 + 30272841 - 30273014 1 174

ATG ...

MAD ...

40695 18 + 36794340 - 36794417 1 78

ATG ...

MRS ...

40698 18 + 6765239 - 6765283 1 45

CTG ...

LGR ...

40700 1 + 171126103 - 171126231 1 129

TTG ...

LTA ...

40702 18 + 74216238 - 74216270 1 33

ATG ...

MAA ...

40704 18 + 21008862 - 21008894 1 33

CTG ...

LVA ...

40706 18 + 76930167 - 76930220 1 54

GTG ...

VRE ...

40708 18 + 34624800 - 34624835 1 36

ATG ...

MEV ...

40710 18 + 77779889 - 77779999 1 111

TTG ...

LAP ...

40712 18 - 56550276 - 56550419 1 144

GTG ...

VSL ...

40714 18 - 46593245 - 46593304 1 60

TTG ...

LEK ...

40716 18 + 53862245 - 53862313 1 69

ATG ...

MCS ...

40718 18 + 36760262 - 36760303 1 42

TTG ...

LVP ...

40720 18 + 35572514 - 35572696 1 183

CTG ...

LLH ...

40722 18 - 9619269 - 9619391 1 123

TTG ...

LPL ...

40724 18 - 36667454 - 36667573 1 120

GTG ...

VGV ...

40726 18 + 76939572 - 76939622 1 51

CTG ...

LGN ...

40728 18 + 14783478 - 14783582 1 105

GTG ...

VCS ...

40730 18 - 56544961 - 56545014 1 54

CTG ...

LLP ...

40732 18 + 6765223 - 6765252 1 30

CTG ...

LTG ...

40734 1 - 13589784 - 13589879 1 96

CTG ...

LRT ...

40736 18 + 60777830 - 60777874 1 45

CTG ...

LEP ...

40738 18 + 35572856 - 35572939 1 84

TTG ...

LKT ...

40740 18 - 56531482 - 56531538 1 57

GTG ...

VNV ...

40742 18 + 30272993 - 30273022 1 30

CTG ...

LDI ...

40744 1 - 86582313 - 86582381 1 69

GTG ...

VGG ...

40746 18 - 40206252 - 40206281 1 30

GTG ...

VLC ...

40749 18 + 65812702 - 65812818 1 117

CTG ...

LFL ...

40751 18 - 37643002 - 37643088 1 87

ATG ...

MSE ...

40753 18 + 35584756 - 35584977 1 222

GTG ...

VGD ...

40755 18 - 46597301 - 46597438 1 138

GTG ...

VAP ...

40757 18 + 39773572 - 39773745 1 174

TTG ...

LIL ...

40759 18 + 36794334 - 36794417 1 84

ATG ...

MNM ...

40761 18 - 38328873 - 38328938 1 66

CTG ...

LYS ...

40763 18 - 77017453 - 77017548 1 96

CTG ...

LET ...

40765 1 + 6244861 - 6244983 1 123

CTG ...

LSH ...

40767 18 + 61555805 - 61555939 1 135

CTG ...

LVR ...

40769 18 + 74787260 - 74787289 1 30

GTG ...

VSS ...

40771 18 + 36560867 - 36561061 1 195

GTG ...

VRL ...

40773 18 - 56550276 - 56550335 1 60

TTG ...

LSR ...

40775 18 + 35613459 - 35613506 1 48

ATG ...

MTL ...

40777 1 - 163987564 - 163987701 1 138

TTG ...

LFD ...

40780 18 + 38456093 - 38456125 1 33

CTG ...

LAL ...

40782 18 + 36795056 - 36795208 1 153

CTG ...

LSS ...

40784 18 - 46588452 - 46588505 1 54

CTG ...

LKS ...

40786 18 + 4649077 - 4649118 1 42

ATG ...

MGP ...

40788 18 + 32079951 - 32080067 1 117

GTG ...

VTL ...

40790 18 - 34939339 - 34939404 1 66

ATG ...

MIL ...

Previous 355 Next

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5