Metam
ORF

Logo

ORF Browser

Selected

filters

Database

M.musculus

ORFs

No result matching criteria

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

40587 1 + 88227110 - 88227151 1 42

TTG ...

LGP ...

40589 1 - 128376148 - 128376261 1 114

ATG ...

MPT ...

40591 1 - 65030564 - 65030596 1 33

TTG ...

LAL ...

40593 18 + 14731040 - 14731105 1 66

ATG ...

MMM ...

40595 18 - 34614444 - 34614509 1 66

CTG ...

LTA ...

40597 18 + 31804083 - 31804154 1 72

ATG ...

MTH ...

40599 1 + 160199519 - 160199566 1 48

GTG ...

VLS ...

40601 18 + 12185729 - 12185764 1 36

TTG ...

LDA ...

40603 1 - 125405827 - 125405910 1 84

CTG ...

LLR ...

40605 18 + 24264408 - 24264536 1 129

TTG ...

LIR ...

40607 18 - 34373225 - 34373263 1 39

CTG ...

LIS ...

40610 1 - 118311086 - 118311181 1 96

GTG ...

VDA ...

40612 1 + 90606560 - 90606667 1 108

TTG ...

LVS ...

40614 18 + 77780236 - 77780310 1 75

TTG ...

LKH ...

40616 1 + 38049189 - 38049344 1 156

TTG ...

LAF ...

40618 18 - 63692176 - 63692262 1 87

CTG ...

LQP ...

40620 18 - 12771248 - 12771409 1 162

GTG ...

VIF ...

40622 18 + 73863979 - 73864071 1 93

CTG ...

LEE ...

40624 18 + 46607530 - 46607595 1 66

CTG ...

LFA ...

40626 18 + 60564392 - 60564430 1 39

CTG ...

LVP ...

40628 18 + 60566428 - 60566529 1 102

TTG ...

LAR ...

40630 18 + 77774043 - 77774114 1 72

CTG ...

LQG ...

40632 18 + 35572589 - 35572696 1 108

TTG ...

LMI ...

40634 18 - 46588452 - 46588532 1 81

GTG ...

VVS ...

40636 1 - 10034043 - 10034093 1 51

CTG ...

LVM ...

40638 18 - 73640258 - 73640467 1 210

CTG ...

LSA ...

40640 18 + 24254600 - 24254725 1 126

CTG ...

LRT ...

40642 18 + 60807916 - 60808014 1 99

GTG ...

VEL ...

40644 18 + 36583672 - 36583767 1 96

TTG ...

LMA ...

40647 18 - 46597037 - 46597222 1 186

CTG ...

LLA ...

40649 18 + 59072301 - 59072450 1 150

TTG ...

LYG ...

40651 18 - 34651543 - 34651602 1 60

CTG ...

LLL ...

40653 18 - 65991328 - 65991375 1 48

GTG ...

VKS ...

40655 18 + 75005954 - 75005992 1 39

CTG ...

LFG ...

40657 18 + 61555672 - 61555707 1 36

GTG ...

VEQ ...

40659 18 - 34651357 - 34651440 1 84

CTG ...

LPA ...

40661 18 + 35572628 - 35572696 1 69

ATG ...

MTM ...

40663 18 - 63679463 - 63679519 1 57

CTG ...

LPP ...

40665 18 + 77781835 - 77781984 1 150

ATG ...

MRV ...

40667 18 + 14706274 - 14706315 1 42

ATG ...

MDT ...

40669 18 + 38442954 - 38443031 1 78

CTG ...

LQV ...

40671 18 + 35572427 - 35572492 1 66

CTG ...

LRT ...

40673 18 - 10016537 - 10016569 1 33

GTG ...

VPE ...

40675 1 + 172101459 - 172101518 1 60

TTG ...

LIL ...

40677 18 - 37643941 - 37643988 1 48

TTG ...

LLK ...

40679 18 - 37643281 - 37643367 1 87

CTG ...

LMG ...

40681 18 - 34651395 - 34651460 1 66

CTG ...

LRS ...

40683 18 - 76994390 - 76994425 1 36

GTG ...

VFV ...

40685 18 + 23990209 - 23990304 1 96

CTG ...

LYN ...

40687 18 - 36668592 - 36668822 1 231

GTG ...

VDH ...

Previous 354 Next

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5