Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

40484 18 + 30298633 - 30298797 1 165

CTG ...

LEL ...

40486 18 + 30272934 - 30273014 1 81

CTG ...

LGS ...

40488 1 + 87213940 - 87213972 1 33

ATG ...

MGP ...

40491 18 - 6222721 - 6222753 1 33

GTG ...

VAG ...

40493 18 + 77780169 - 77780315 1 147

CTG ...

LLE ...

40495 18 + 36600774 - 36600917 1 144

GTG ...

VHA ...

40497 18 + 77780254 - 77780310 1 57

ATG ...

MCP ...

40499 18 + 24254531 - 24254725 1 195

GTG ...

VYP ...

40501 1 + 128103371 - 128103478 1 108

GTG ...

VMG ...

40503 18 + 9959260 - 9959319 1 60

ATG ...

MKK ...

40506 18 + 9993499 - 9993534 1 36

CTG ...

LAR ...

40508 18 - 34651543 - 34651623 1 81

TTG ...

LQE ...

40510 18 - 36744421 - 36744513 1 93

CTG ...

LPL ...

40512 18 + 30272946 - 30273014 1 69

CTG ...

LSW ...

40514 18 + 35590386 - 35590430 1 45

CTG ...

LNK ...

40516 18 - 34938610 - 34938678 1 69

CTG ...

LER ...

40518 18 - 36744421 - 36744507 1 87

CTG ...

LLA ...

40520 18 - 56550276 - 56550413 1 138

TTG ...

LEM ...

40522 18 - 12759425 - 12759505 1 81

CTG ...

LRS ...

40524 1 + 75236853 - 75236933 1 81

CTG ...

LEE ...

40526 18 - 6212513 - 6212599 1 87

TTG ...

LEQ ...

40528 18 + 30277012 - 30277119 1 108

CTG ...

LPR ...

40530 18 + 61577200 - 61577256 1 57

ATG ...

MKR ...

40532 18 + 35582815 - 35582862 1 48

CTG ...

LSE ...

40534 1 - 86350776 - 86350910 1 135

TTG ...

LVV ...

40536 18 - 56925299 - 56925358 1 60

CTG ...

LRI ...

40538 18 + 74216147 - 74216317 1 171

GTG ...

VAA ...

40540 18 + 32086283 - 32086498 1 216

CTG ...

LSD ...

40542 18 + 35613474 - 35613506 1 33

GTG ...

VMA ...

40544 18 + 39773629 - 39773745 1 117

CTG ...

LLF ...

40546 18 + 77781841 - 77781984 1 144

GTG ...

VYG ...

40548 18 + 32087124 - 32087156 1 33

TTG ...

LPT ...

40550 18 - 37643092 - 37643175 1 84

CTG ...

LLI ...

40552 1 - 23846449 - 23846508 1 60

TTG ...

LAS ...

40554 1 - 33669708 - 33669740 1 33

GTG ...

VFL ...

40557 18 + 35572760 - 35572939 1 180

TTG ...

LTV ...

40559 18 + 36613896 - 36613985 1 90

TTG ...

LDY ...

40561 18 + 60807964 - 60808014 1 51

CTG ...

LGR ...

40563 18 + 36644626 - 36644718 1 93

GTG ...

VNP ...

40565 18 + 30272919 - 30273014 1 96

CTG ...

LSL ...

40567 18 - 73640258 - 73640443 1 186

GTG ...

VDD ...

40569 18 + 30333193 - 30333333 1 141

TTG ...

LGR ...

40571 1 - 178331345 - 178331386 1 42

TTG ...

LLP ...

40573 1 + 172087600 - 172087641 1 42

ATG ...

MGS ...

40575 18 - 34614444 - 34614485 1 42

CTG ...

LKK ...

40577 18 + 34842462 - 34842503 1 42

TTG ...

LAP ...

40579 1 + 38022287 - 38022322 1 36

GTG ...

VTL ...

40581 18 + 84851435 - 84851506 1 72

CTG ...

LHG ...

40583 18 + 61555595 - 61555639 1 45

CTG ...

LPP ...

40585 18 + 35572793 - 35572939 1 147

CTG ...

LAP ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5