Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

40376 18 - 46593216 - 46593323 1 108

GTG ...

VYF ...

40378 1 + 153447780 - 153447998 1 219

GTG ...

VVS ...

40380 1 - 67009907 - 67009948 1 42

TTG ...

LER ...

40382 18 - 76994390 - 76994461 1 72

GTG ...

VQM ...

40385 18 + 32084671 - 32084754 1 84

TTG ...

LEE ...

40387 18 + 4649074 - 4649118 1 45

GTG ...

VMG ...

40390 18 - 12771248 - 12771430 1 183

CTG ...

LSK ...

40392 18 + 77065340 - 77065417 1 78

TTG ...

LAA ...

40395 18 + 35572496 - 35572696 1 201

ATG ...

MVE ...

40397 18 + 32080391 - 32080630 1 240

GTG ...

VQN ...

40399 18 - 36744177 - 36744218 1 42

ATG ...

MLG ...

40401 18 + 60777824 - 60777874 1 51

CTG ...

LDL ...

40404 18 + 76944461 - 76944535 1 75

ATG ...

MWM ...

40406 1 - 79761560 - 79761652 1 93

CTG ...

LSK ...

40408 18 + 84851418 - 84851576 1 159

CTG ...

LII ...

40410 18 - 34623451 - 34623540 1 90

CTG ...

LST ...

40412 18 + 60566472 - 60566501 1 30

TTG ...

LFL ...

40414 18 + 67800672 - 67800749 1 78

ATG ...

MRS ...

40416 18 + 61555604 - 61555639 1 36

GTG ...

VRP ...

40418 18 - 37643092 - 37643196 1 105

CTG ...

LWR ...

40420 1 + 191582440 - 191582532 1 93

GTG ...

VRF ...

40422 18 + 32087106 - 32087156 1 51

CTG ...

LKK ...

40424 1 + 98480737 - 98480790 1 54

GTG ...

VEC ...

40426 18 - 36744421 - 36744471 1 51

GTG ...

VRF ...

40428 18 + 77781811 - 77781984 1 174

TTG ...

LKN ...

40430 18 + 60564384 - 60564533 1 150

GTG ...

VFR ...

40433 1 + 87771408 - 87771461 1 54

CTG ...

LQK ...

40436 18 + 32083397 - 32083462 1 66

GTG ...

VKK ...

40438 18 + 31789182 - 31789211 1 30

GTG ...

VEA ...

40441 18 + 23990227 - 23990304 1 78

CTG ...

LSS ...

40443 18 + 14783448 - 14783582 1 135

GTG ...

VSP ...

40445 18 + 24264498 - 24264536 1 39

CTG ...

LEP ...

40447 18 - 34613212 - 34613292 1 81

CTG ...

LKR ...

40450 18 - 38328873 - 38328947 1 75

GTG ...

VDP ...

40452 1 + 172099746 - 172099775 1 30

GTG ...

VKI ...

40454 18 + 36560852 - 36561061 1 210

CTG ...

LGI ...

40456 18 - 77017453 - 77017536 1 84

TTG ...

LME ...

40458 1 - 36632416 - 36632457 1 42

CTG ...

LGS ...

40460 1 - 36815883 - 36815936 1 54

CTG ...

LAL ...

40462 18 - 76997595 - 76997690 1 96

GTG ...

VLF ...

40464 18 + 36760256 - 36760303 1 48

ATG ...

MKL ...

40466 18 + 24264438 - 24264536 1 99

GTG ...

VSR ...

40468 18 - 34651357 - 34651452 1 96

TTG ...

LAF ...

40470 18 - 10024519 - 10024614 1 96

GTG ...

VFK ...

40472 18 + 35572655 - 35572696 1 42

CTG ...

LVI ...

40474 18 - 63682260 - 63682307 1 48

GTG ...

VWT ...

40476 1 + 93784803 - 93784961 1 159

CTG ...

LTD ...

40478 18 - 76997595 - 76997687 1 93

CTG ...

LFE ...

40480 18 + 6788519 - 6788686 1 168

TTG ...

LRS ...

40482 1 + 157412798 - 157412839 1 42

GTG ...

VLG ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5