Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

40271 18 - 56544961 - 56545011 1 51

CTG ...

LPG ...

40273 1 + 38037245 - 38037331 1 87

CTG ...

LRA ...

40275 18 + 75005989 - 75006018 1 30

TTG ...

LSR ...

40277 18 - 46597037 - 46597162 1 126

CTG ...

LPD ...

40279 18 + 34762506 - 34762574 1 69

ATG ...

MTG ...

40281 18 + 60567450 - 60567623 1 174

GTG ...

VAD ...

40283 18 - 34949038 - 34949100 1 63

ATG ...

MLG ...

40285 18 + 39773566 - 39773745 1 180

TTG ...

LVL ...

40287 1 - 135122267 - 135122419 1 153

CTG ...

LPA ...

40289 18 + 61577179 - 61577256 1 78

CTG ...

LQQ ...

40291 18 - 77011972 - 77012103 1 132

CTG ...

LTN ...

40293 18 - 56550276 - 56550395 1 120

CTG ...

LVE ...

40295 1 + 43983292 - 43983327 1 36

TTG ...

LLL ...

40298 18 + 6778528 - 6778560 1 33

ATG ...

MEI ...

40300 18 + 36753513 - 36753656 1 144

GTG ...

VIG ...

40302 18 + 6788567 - 6788686 1 120

GTG ...

VRT ...

40304 18 - 56550276 - 56550362 1 87

GTG ...

VDV ...

40306 18 + 57730726 - 57730941 1 216

GTG ...

VEV ...

40308 18 - 16650400 - 16650459 1 60

ATG ...

MKA ...

40310 18 - 34949038 - 34949103 1 66

GTG ...

VML ...

40312 18 + 6788501 - 6788686 1 186

ATG ...

MVY ...

40314 18 + 60807934 - 60808014 1 81

GTG ...

VSL ...

40316 18 + 50140378 - 50140422 1 45

CTG ...

LDT ...

40318 1 + 125585166 - 125585237 1 72

GTG ...

VVL ...

40320 1 - 84731676 - 84731732 1 57

TTG ...

LRF ...

40322 18 - 73640258 - 73640425 1 168

TTG ...

LCI ...

40324 18 + 31804080 - 31804154 1 75

GTG ...

VMT ...

40326 18 + 57730756 - 57730941 1 186

GTG ...

VEE ...

40328 18 - 63682264 - 63682305 1 42

GTG ...

VDR ...

40330 18 - 56544961 - 56544990 1 30

CTG ...

LVC ...

40332 18 - 46593245 - 46593277 1 33

GTG ...

VRT ...

40334 1 + 191621279 - 191621464 1 186

GTG ...

VES ...

40336 18 + 73872036 - 73872068 1 33

GTG ...

VPW ...

40338 18 + 3421283 - 3421369 1 87

GTG ...

VSA ...

40341 18 + 77780974 - 77781087 1 114

TTG ...

LDC ...

40343 18 + 52694245 - 52694280 1 36

TTG ...

LGR ...

40346 18 + 61555552 - 61555707 1 156

CTG ...

LAL ...

40348 18 + 59072235 - 59072450 1 216

GTG ...

VEN ...

40351 18 + 77781856 - 77781984 1 129

TTG ...

LTN ...

40353 18 + 21010729 - 21010785 1 57

ATG ...

MNM ...

40355 18 + 24264369 - 24264536 1 168

GTG ...

VPV ...

40357 18 + 24264363 - 24264536 1 174

CTG ...

LKV ...

40359 18 + 84851387 - 84851506 1 120

CTG ...

LGM ...

40361 18 + 14706244 - 14706315 1 72

ATG ...

MTG ...

40363 18 + 60567406 - 60567468 1 63

CTG ...

LIR ...

40365 18 + 35572505 - 35572696 1 192

ATG ...

MAD ...

40367 18 + 38419097 - 38419180 1 84

CTG ...

LRP ...

40369 18 + 36760250 - 36760303 1 54

CTG ...

LSM ...

40372 18 + 34624791 - 34624835 1 45

ATG ...

MNN ...

40374 18 - 46597037 - 46597210 1 174

CTG ...

LLL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5