Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

40161 18 + 12185675 - 12185764 1 90

CTG ...

LPV ...

40163 18 - 10024519 - 10024638 1 120

TTG ...

LNT ...

40167 18 - 12763478 - 12763549 1 72

GTG ...

VHN ...

40170 18 + 74216213 - 74216317 1 105

CTG ...

LSY ...

40172 18 + 36613917 - 36613985 1 69

CTG ...

LSV ...

40174 18 + 35572700 - 35572939 1 240

ATG ...

MEK ...

40176 18 - 46597152 - 46597235 1 84

TTG ...

LGL ...

40178 18 - 34651357 - 34651431 1 75

TTG ...

LPL ...

40181 1 - 67038535 - 67038585 1 51

TTG ...

LRR ...

40183 18 - 6212513 - 6212602 1 90

GTG ...

VLE ...

40185 18 + 35572787 - 35572939 1 153

GTG ...

VVL ...

40188 18 - 73640258 - 73640401 1 144

GTG ...

VKG ...

40190 1 - 175603921 - 175603965 1 45

TTG ...

LVT ...

40192 18 + 76944467 - 76944535 1 69

ATG ...

MPG ...

40194 18 + 77780106 - 77780315 1 210

TTG ...

LLR ...

40196 18 + 35572328 - 35572390 1 63

GTG ...

VEI ...

40198 18 + 34624806 - 34624835 1 30

GTG ...

VSV ...

40201 18 - 56562006 - 56562128 1 123

CTG ...

LIH ...

40203 18 + 14757623 - 14757661 1 39

TTG ...

LSS ...

40205 18 + 44854653 - 44854691 1 39

ATG ...

MGM ...

40208 1 + 86592327 - 86592389 1 63

CTG ...

LNL ...

40210 18 + 32087082 - 32087156 1 75

TTG ...

LNN ...

40212 18 + 49832976 - 49833011 1 36

CTG ...

LAP ...

40215 18 + 39773656 - 39773745 1 90

CTG ...

LRP ...

40217 18 - 37642963 - 37642995 1 33

ATG ...

MQK ...

40219 18 - 46588452 - 46588571 1 120

GTG ...

VAY ...

40221 18 - 9618984 - 9619067 1 84

CTG ...

LGK ...

40223 1 + 179684263 - 179684307 1 45

GTG ...

VLK ...

40225 18 + 60567403 - 60567468 1 66

TTG ...

LLI ...

40227 18 + 77780221 - 77780310 1 90

CTG ...

LPY ...

40229 18 - 46593245 - 46593409 1 165

ATG ...

MIV ...

40231 18 - 10024519 - 10024590 1 72

TTG ...

LTG ...

40233 18 + 60564400 - 60564456 1 57

CTG ...

LGS ...

40235 18 + 60567373 - 60567468 1 96

ATG ...

MRS ...

40237 18 + 60566336 - 60566392 1 57

TTG ...

LSS ...

40239 18 + 30277030 - 30277119 1 90

GTG ...

VAL ...

40241 18 - 46597152 - 46597343 1 192

CTG ...

LGP ...

40243 18 - 46593245 - 46593352 1 108

ATG ...

MSF ...

40245 1 - 160212679 - 160212756 1 78

CTG ...

LRR ...

40247 18 + 39773671 - 39773745 1 75

CTG ...

LQC ...

40249 18 + 36644620 - 36644718 1 99

GTG ...

VDV ...

40251 18 - 9618984 - 9619028 1 45

ATG ...

MSW ...

40253 1 + 59696016 - 59696114 1 99

CTG ...

LKK ...

40255 18 + 74787218 - 74787289 1 72

CTG ...

LLC ...

40257 18 - 56562006 - 56562101 1 96

CTG ...

LQD ...

40259 18 + 77780278 - 77780310 1 33

ATG ...

MLF ...

40261 18 - 34614444 - 34614545 1 102

GTG ...

VVE ...

40264 18 - 6212513 - 6212578 1 66

GTG ...

VEH ...

40266 18 - 46728217 - 46728294 1 78

TTG ...

LIP ...

40268 1 + 72849625 - 72849708 1 84

ATG ...

MIG ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5