Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

40906 18 - 56812059 - 56925364 2 75

TTG ...

LGL ...

40909 18 - 56534252 - 56537306 3 126

TTG ...

LLS ...

40911 18 - 40206390 - 40207708 2 33

TTG ...

LQW ...

40913 18 + 68300420 - 68305815 2 42

GTG ...

VWC ...

40915 18 + 23989721 - 23990304 2 138

ATG ...

MES ...

40917 18 - 36404377 - 36432401 3 180

TTG ...

LFS ...

40920 18 + 68303460 - 68305815 2 72

ATG ...

MCP ...

40923 18 - 56812059 - 56925358 2 69

CTG ...

LRI ...

40925 18 - 76977386 - 76978547 3 258

TTG ...

LKL ...

40928 18 + 6765314 - 6770064 2 30

GTG ...

VGW ...

40930 1 + 59974903 - 59975007 1 105

TTG ...

LPK ...

40933 18 - 56526953 - 56531631 4 273

GTG ...

VLC ...

40935 18 + 77780251 - 77781087 2 156

GTG ...

VMC ...

40937 18 + 75006102 - 75009343 4 255

TTG ...

LDR ...

40939 1 - 171288891 - 171288971 1 81

CTG ...

LGP ...

40941 1 - 184819221 - 184819259 1 39

CTG ...

LRV ...

40943 18 - 73640258 - 73641807 2 237

GTG ...

VGG ...

40946 18 + 61575498 - 61576532 2 78

CTG ...

LAL ...

40948 18 + 68319160 - 68321355 3 132

GTG ...

VGD ...

40950 18 + 34846179 - 34846469 3 210

GTG ...

VKP ...

40952 1 + 72849673 - 72849708 1 36

GTG ...

VTS ...

40954 18 + 58671296 - 58671469 2 54

TTG ...

LGT ...

40956 1 - 171237142 - 171237183 1 42

TTG ...

LMT ...

40958 18 + 77781895 - 77782353 2 108

ATG ...

MLS ...

40960 18 + 76944449 - 76951119 2 90

CTG ...

LPC ...

40963 1 + 92934686 - 92934730 1 45

ATG ...

MTQ ...

40966 18 + 77781826 - 77782353 2 177

CTG ...

LLS ...

40968 18 - 64458083 - 64458723 3 204

TTG ...

LIQ ...

40971 18 - 33438714 - 33442923 3 234

TTG ...

LNV ...

40974 18 + 35613459 - 35616214 2 60

ATG ...

MTL ...

40976 18 - 73640258 - 73641837 2 267

GTG ...

VAG ...

40979 18 + 36795056 - 36796068 2 141

CTG ...

LSS ...

40981 18 - 65998688 - 66002406 2 66

ATG ...

MGP ...

40983 18 + 14731043 - 14757294 2 72

ATG ...

MMA ...

40985 18 + 7905443 - 7906008 2 150

CTG ...

LEK ...

40988 18 - 6209171 - 6210740 2 87

TTG ...

LKT ...

40990 1 - 134234192 - 134234383 1 192

CTG ...

LLM ...

40992 1 + 87433731 - 87433922 1 192

CTG ...

LEE ...

40994 18 + 35579275 - 35581221 2 96

ATG ...

MET ...

40996 18 + 67775059 - 67783942 3 141

ATG ...

MCL ...

40999 18 + 34331213 - 34334299 2 54

GTG ...

VEM ...

41002 18 - 46588580 - 46593304 2 165

TTG ...

LEK ...

41004 18 + 32264638 - 32269889 3 279

CTG ...

LGR ...

41006 18 - 36742567 - 36744340 3 252

GTG ...

VYL ...

41008 18 + 36795152 - 36796068 2 45

CTG ...

LKW ...

41010 18 + 77780248 - 77781087 2 159

CTG ...

LVM ...

41013 18 - 33438714 - 33442932 3 243

GTG ...

VWD ...

41015 1 - 128389115 - 128389150 1 36

ATG ...

MPF ...

41017 18 - 6209171 - 6210770 2 117

GTG ...

VLH ...

41019 18 - 46593491 - 46597218 2 132

TTG ...

LLY ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5