Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

39824 1 + 165461374 - 165461487 1 114

CTG ...

LLL ...

39826 18 + 30276997 - 30277119 1 123

GTG ...

VKY ...

39828 18 + 12185651 - 12185764 1 114

CTG ...

LSE ...

39830 18 + 38442945 - 38443031 1 87

CTG ...

LSR ...

39832 18 + 77780251 - 77780310 1 60

GTG ...

VMC ...

39834 18 + 77779850 - 77779999 1 150

GTG ...

VSA ...

39836 18 + 84851445 - 84851576 1 132

GTG ...

VLQ ...

39838 18 - 46597037 - 46597201 1 165

CTG ...

LPA ...

39840 18 - 10012196 - 10012258 1 63

TTG ...

LRA ...

39843 18 - 37643092 - 37643124 1 33

TTG ...

LFG ...

39845 18 + 67800684 - 67800749 1 66

CTG ...

LTQ ...

39848 18 + 35598635 - 35598763 1 129

TTG ...

LFG ...

39851 18 + 74787227 - 74787289 1 63

CTG ...

LLA ...

39854 18 + 57533870 - 57533950 1 81

CTG ...

LSM ...

39856 18 + 74787200 - 74787289 1 90

CTG ...

LNL ...

39858 18 - 10024519 - 10024554 1 36

GTG ...

VKG ...

39861 18 - 56925299 - 56925364 1 66

TTG ...

LGL ...

39864 1 - 65024603 - 65024737 1 135

TTG ...

LEQ ...

39866 18 + 30277051 - 30277119 1 69

GTG ...

VYG ...

39869 18 + 35572073 - 35572102 1 30

ATG ...

MGV ...

39872 18 + 35572664 - 35572696 1 33

ATG ...

MTE ...

39874 18 - 16629646 - 16629702 1 57

TTG ...

LKR ...

39877 18 + 74216135 - 74216317 1 183

TTG ...

LAD ...

39880 18 - 34939339 - 34939380 1 42

ATG ...

MQR ...

39882 18 - 12759425 - 12759496 1 72

CTG ...

LMK ...

39884 18 + 36613137 - 36613238 1 102

GTG ...

VSL ...

39887 18 + 12185693 - 12185764 1 72

GTG ...

VFD ...

39889 18 + 35572718 - 35572939 1 222

ATG ...

MIL ...

39891 18 + 74216187 - 74216270 1 84

ATG ...

MLP ...

39893 18 + 36613143 - 36613238 1 96

CTG ...

LAC ...

39895 18 - 34948102 - 34948134 1 33

CTG ...

LLI ...

39897 18 + 65812699 - 65812818 1 120

CTG ...

LLF ...

39899 18 - 34499765 - 34499812 1 48

ATG ...

MRN ...

39901 18 + 38442924 - 38443031 1 108

ATG ...

MKR ...

39903 1 + 75509793 - 75510068 1 276

CTG ...

LRL ...

39905 18 + 24264507 - 24264536 1 30

CTG ...

LLA ...

39907 18 - 46588580 - 46588642 1 63

TTG ...

LTI ...

39909 18 + 30333232 - 30333333 1 102

CTG ...

LNK ...

39911 18 + 53862343 - 53862402 1 60

TTG ...

LPR ...

39914 18 + 35584705 - 35584977 1 273

CTG ...

LLV ...

39916 18 + 76951116 - 76951184 1 69

ATG ...

MKD ...

39920 18 + 65814923 - 65814961 1 39

CTG ...

LEK ...

39922 18 + 56730995 - 56731099 1 105

ATG ...

MRP ...

39925 18 - 46593216 - 46593458 1 243

TTG ...

LED ...

39927 18 - 46588580 - 46588663 1 84

ATG ...

MKL ...

39930 18 + 35587631 - 35587864 1 234

GTG ...

VDK ...

39932 18 - 9618948 - 9618983 1 36

TTG ...

LMK ...

39934 18 + 23990254 - 23990304 1 51

CTG ...

LAS ...

39936 18 - 34931834 - 34931914 1 81

GTG ...

VSY ...

39938 18 + 35572772 - 35572939 1 168

ATG ...

MRE ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5