Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

39940 18 - 46588452 - 46588556 1 105

GTG ...

VGE ...

39942 18 + 60807940 - 60808014 1 75

CTG ...

LSW ...

39944 18 + 38442936 - 38443031 1 96

CTG ...

LGN ...

39946 18 + 60566485 - 60566529 1 45

GTG ...

VKG ...

39948 18 + 34762545 - 34762574 1 30

CTG ...

LQW ...

39950 18 - 46588452 - 46588583 1 132

CTG ...

LNT ...

39952 18 - 34623451 - 34623543 1 93

CTG ...

LLS ...

39954 18 - 34651543 - 34651680 1 138

GTG ...

VAA ...

39956 18 - 63675465 - 63675503 1 39

CTG ...

LWH ...

39958 18 - 6210696 - 6210767 1 72

CTG ...

LHR ...

39960 18 + 31761795 - 31761836 1 42

ATG ...

MEL ...

39962 18 + 74216168 - 74216317 1 150

CTG ...

LNC ...

39964 18 - 56562006 - 56562092 1 87

CTG ...

LGL ...

39966 18 - 46593216 - 46593287 1 72

TTG ...

LFP ...

39968 18 + 77780148 - 77780315 1 168

GTG ...

VFY ...

39970 18 + 57730795 - 57730941 1 147

CTG ...

LST ...

39972 18 + 14731037 - 14731105 1 69

TTG ...

LMM ...

39974 18 + 61556551 - 61556613 1 63

CTG ...

LYE ...

39976 1 + 167350329 - 167350475 1 147

GTG ...

VSQ ...

39978 18 + 61555808 - 61555939 1 132

GTG ...

VRK ...

39980 18 - 56544961 - 56545026 1 66

TTG ...

LED ...

39982 18 + 57533876 - 57533950 1 75

ATG ...

MDR ...

39984 18 - 34951220 - 34951366 1 147

GTG ...

VVA ...

39986 18 - 46593216 - 46593434 1 219

TTG ...

LYK ...

39988 18 - 36668592 - 36668699 1 108

CTG ...

LRP ...

39990 18 - 37643040 - 37643120 1 81

TTG ...

LEP ...

39992 18 + 21008773 - 21008802 1 30

TTG ...

LSP ...

39994 18 - 37643092 - 37643172 1 81

CTG ...

LIP ...

39996 18 + 36613893 - 36613985 1 93

CTG ...

LLD ...

39999 18 + 12181590 - 12181751 1 162

GTG ...

VIF ...

40001 18 + 35572897 - 35572944 1 48

CTG ...

LCS ...

40003 18 - 56559218 - 56559271 1 54

ATG ...

MKK ...

40006 18 + 53862278 - 53862313 1 36

ATG ...

MLE ...

40008 18 + 65814860 - 65814961 1 102

CTG ...

LTK ...

40010 18 + 61556566 - 61556613 1 48

CTG ...

LYK ...

40012 18 + 77780248 - 77780310 1 63

CTG ...

LVM ...

40015 18 + 35572622 - 35572696 1 75

TTG ...

LIM ...

40017 18 + 42275422 - 42275454 1 33

ATG ...

MPG ...

40020 18 - 76997595 - 76997645 1 51

CTG ...

LDE ...

40023 18 + 6788513 - 6788686 1 174

GTG ...

VPL ...

40025 1 - 172199061 - 172199180 1 120

CTG ...

LKI ...

40027 18 - 34651543 - 34651659 1 117

GTG ...

VPG ...

40029 18 + 68305786 - 68305815 1 30

TTG ...

LMR ...

40032 18 + 24254564 - 24254725 1 162

GTG ...

VIV ...

40034 18 - 46593216 - 46593437 1 222

GTG ...

VLY ...

40036 18 + 61578707 - 61578748 1 42

GTG ...

VGC ...

40039 18 + 74787206 - 74787289 1 84

TTG ...

LLP ...

40041 18 + 77779847 - 77779999 1 153

GTG ...

VVS ...

40043 18 - 56548443 - 56548538 1 96

TTG ...

LVG ...

40045 18 + 39773623 - 39773745 1 123

CTG ...

LAL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5