Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

39709 18 - 46597152 - 46597229 1 78

TTG ...

LQA ...

39711 1 - 135123898 - 135124026 1 129

TTG ...

LVP ...

39713 18 + 77065306 - 77065374 1 69

GTG ...

VQD ...

39716 18 + 74787209 - 74787289 1 81

CTG ...

LPG ...

39718 18 - 34949038 - 34949106 1 69

ATG ...

MVM ...

39721 18 + 30333247 - 30333333 1 87

GTG ...

VEG ...

39723 18 + 14783309 - 14783365 1 57

CTG ...

LAR ...

39726 18 + 84851448 - 84851576 1 129

TTG ...

LQG ...

39728 18 + 31760083 - 31760124 1 42

CTG ...

LLF ...

39731 18 + 60564395 - 60564430 1 36

GTG ...

VPW ...

39733 18 + 35572733 - 35572939 1 207

GTG ...

VRP ...

39735 18 + 6788498 - 6788686 1 189

GTG ...

VMV ...

39737 1 - 155812529 - 155812582 1 54

GTG ...

VAT ...

39739 18 - 38328873 - 38328950 1 78

CTG ...

LVD ...

39742 1 + 69873174 - 69873281 1 108

GTG ...

VLH ...

39744 1 + 82587375 - 82587443 1 69

GTG ...

VFL ...

39746 18 + 36753507 - 36753656 1 150

GTG ...

VNV ...

39748 18 - 34939339 - 34939398 1 60

TTG ...

LKI ...

39750 18 - 73640258 - 73640311 1 54

TTG ...

LDE ...

39753 1 - 135394110 - 135394349 1 240

CTG ...

LKV ...

39755 1 - 97853095 - 97853124 1 30

GTG ...

VTM ...

39758 18 + 74787245 - 74787289 1 45

CTG ...

LKP ...

39760 18 + 75008750 - 75008809 1 60

CTG ...

LWS ...

39762 18 - 40207724 - 40207777 1 54

GTG ...

VCH ...

39765 18 + 61556506 - 61556613 1 108

GTG ...

VAV ...

39767 1 - 16645776 - 16645811 1 36

ATG ...

MVA ...

39769 18 + 35572598 - 35572696 1 99

GTG ...

VVL ...

39771 18 - 46588452 - 46588514 1 63

GTG ...

VFL ...

39773 18 + 38442963 - 38443031 1 69

ATG ...

MLL ...

39775 18 + 77065313 - 77065417 1 105

ATG ...

MLQ ...

39777 18 - 12759425 - 12759493 1 69

ATG ...

MKC ...

39780 18 + 35572820 - 35572939 1 120

TTG ...

LRK ...

39782 18 - 9619269 - 9619352 1 84

CTG ...

LNS ...

39784 1 + 167361494 - 167361595 1 102

TTG ...

LET ...

39787 1 + 84896609 - 84896716 1 108

CTG ...

LDL ...

39789 18 + 23475162 - 23475200 1 39

ATG ...

MPQ ...

39792 18 - 34499765 - 34499797 1 33

CTG ...

LIF ...

39795 18 - 6241296 - 6241367 1 72

CTG ...

LWR ...

39797 18 + 34846009 - 34846092 1 84

ATG ...

MRM ...

39799 18 + 77777525 - 77777605 1 81

CTG ...

LRC ...

39801 1 - 178332143 - 178332298 1 156

TTG ...

LPL ...

39803 18 + 35613396 - 35613506 1 111

ATG ...

MNG ...

39805 18 - 46597301 - 46597336 1 36

CTG ...

LPR ...

39807 1 + 45822448 - 45822642 1 195

CTG ...

LLA ...

39809 18 + 60567492 - 60567623 1 132

CTG ...

LDP ...

39811 1 - 51477474 - 51477536 1 63

GTG ...

VWD ...

39813 18 - 34613212 - 34613244 1 33

CTG ...

LDE ...

39816 18 - 34651543 - 34651599 1 57

CTG ...

LLI ...

39819 18 - 56548443 - 56548505 1 63

GTG ...

VAV ...

39821 18 - 46728217 - 46728270 1 54

TTG ...

LSV ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5