Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

39594 18 + 60541578 - 60541619 1 42

GTG ...

VVG ...

39596 18 - 56550276 - 56550392 1 117

GTG ...

VEG ...

39598 18 - 6210696 - 6210788 1 93

CTG ...

LTT ...

39600 18 + 35572550 - 35572696 1 147

ATG ...

MIG ...

39602 18 + 36638301 - 36638384 1 84

GTG ...

VPS ...

39605 18 - 6210696 - 6210728 1 33

TTG ...

LNS ...

39607 18 + 60564453 - 60564533 1 81

TTG ...

LKN ...

39609 18 - 56542195 - 56542278 1 84

CTG ...

LGA ...

39611 18 - 36668592 - 36668702 1 111

GTG ...

VLR ...

39614 18 - 9618948 - 9618980 1 33

ATG ...

MKL ...

39616 18 + 35613354 - 35613506 1 153

TTG ...

LNA ...

39618 18 - 34945940 - 34945981 1 42

CTG ...

LRR ...

39620 1 - 191561413 - 191561520 1 108

GTG ...

VNQ ...

39623 18 + 84851469 - 84851576 1 108

CTG ...

LFR ...

39625 18 + 14731046 - 14731105 1 60

ATG ...

MAS ...

39628 18 + 60564432 - 60564533 1 102

GTG ...

VCQ ...

39630 18 + 84871587 - 84871637 1 51

ATG ...

MHE ...

39632 18 + 50140366 - 50140422 1 57

GTG ...

VKT ...

39635 18 + 84851381 - 84851506 1 126

GTG ...

VEL ...

39637 18 + 6788486 - 6788686 1 201

GTG ...

VQK ...

39639 18 + 30276985 - 30277119 1 135

CTG ...

LKL ...

39641 18 - 34941861 - 34941998 1 138

GTG ...

VCW ...

39643 18 + 35572592 - 35572696 1 105

ATG ...

MIV ...

39645 18 - 56562006 - 56562131 1 126

CTG ...

LLI ...

39647 18 + 56573053 - 56573100 1 48

CTG ...

LAT ...

39650 18 + 35613477 - 35613506 1 30

ATG ...

MAL ...

39652 18 + 23990272 - 23990304 1 33

GTG ...

VDK ...

39655 18 + 34336107 - 34336232 1 126

GTG ...

VML ...

39658 18 - 37638549 - 37638641 1 93

CTG ...

LAV ...

39660 1 + 186968255 - 186968533 1 279

GTG ...

VTK ...

39662 18 + 34842862 - 34842906 1 45

ATG ...

MDD ...

39665 18 + 35578907 - 35579029 1 123

GTG ...

VIH ...

39668 18 + 35572915 - 35572944 1 30

TTG ...

LPV ...

39670 18 + 61556548 - 61556613 1 66

TTG ...

LLY ...

39672 18 - 63692176 - 63692232 1 57

CTG ...

LCF ...

39675 18 + 34762542 - 34762574 1 33

GTG ...

VLQ ...

39678 18 + 30277036 - 30277119 1 84

TTG ...

LTI ...

39680 1 - 175625447 - 175625509 1 63

CTG ...

LQC ...

39682 18 + 35572634 - 35572696 1 63

ATG ...

MEV ...

39684 18 - 46593216 - 46593494 1 279

GTG ...

VIT ...

39686 1 - 184819221 - 184819340 1 120

CTG ...

LCD ...

39688 18 + 36753489 - 36753656 1 168

GTG ...

VRD ...

39690 18 + 39773704 - 39773745 1 42

CTG ...

LSH ...

39693 18 - 63682260 - 63682298 1 39

GTG ...

VSS ...

39695 1 + 153433277 - 153433393 1 117

GTG ...

VDE ...

39697 1 + 133136801 - 133136887 1 87

TTG ...

LAF ...

39699 18 + 77780962 - 77781087 1 126

ATG ...

MSV ...

39701 18 - 12771248 - 12771382 1 135

CTG ...

LQR ...

39704 18 - 34941861 - 34942013 1 153

CTG ...

LPS ...

39706 18 + 12185681 - 12185764 1 84

GTG ...

VIA ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5