Metam
ORF

Logo

ORF Browser

Selected

filters

Database

M.musculus

ORFs

No result matching criteria

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

39466 18 + 35598698 - 35598763 1 66

CTG ...

LWR ...

39469 18 - 34938610 - 34938666 1 57

GTG ...

VRQ ...

39472 18 - 9619269 - 9619310 1 42

TTG ...

LTS ...

39475 18 + 46607761 - 46607814 1 54

CTG ...

LRK ...

39478 1 + 134426010 - 134426099 1 90

CTG ...

LGA ...

39480 18 - 46588452 - 46588535 1 84

CTG ...

LVV ...

39483 18 + 36753432 - 36753656 1 225

TTG ...

LKT ...

39486 1 + 59702827 - 59702976 1 150

TTG ...

LDK ...

39488 1 + 93685766 - 93685810 1 45

ATG ...

MEG ...

39491 18 + 60566363 - 60566392 1 30

CTG ...

LME ...

39494 18 + 74787230 - 74787289 1 60

CTG ...

LAK ...

39497 18 + 38442960 - 38443031 1 72

GTG ...

VML ...

39499 18 + 35572730 - 35572939 1 210

TTG ...

LVR ...

39501 18 + 32080002 - 32080067 1 66

GTG ...

VKI ...

39504 1 - 75136395 - 75136526 1 132

ATG ...

MPA ...

39506 18 + 24264354 - 24264536 1 183

GTG ...

VKK ...

39509 18 + 6788552 - 6788686 1 135

CTG ...

LAC ...

39511 18 + 76930056 - 76930118 1 63

GTG ...

VAA ...

39514 18 - 46597301 - 46597417 1 117

GTG ...

VSL ...

39516 18 + 36583708 - 36583767 1 60

GTG ...

VKL ...

39519 18 + 84851393 - 84851506 1 114

ATG ...

MSR ...

39521 18 + 35598644 - 35598763 1 120

CTG ...

LEK ...

39523 18 + 24264423 - 24264536 1 114

TTG ...

LKG ...

39525 18 - 56534182 - 56534244 1 63

GTG ...

VDR ...

39528 18 - 37643092 - 37643211 1 120

GTG ...

VTY ...

39531 18 - 37638549 - 37638635 1 87

GTG ...

VGA ...

39534 18 + 73877497 - 73877541 1 45

GTG ...

VKK ...

39537 18 + 75008666 - 75008809 1 144

CTG ...

LGQ ...

39540 18 + 60546256 - 60546321 1 66

TTG ...

LSR ...

39543 18 - 9619212 - 9619241 1 30

TTG ...

LAL ...

39545 18 + 35587673 - 35587864 1 192

TTG ...

LEN ...

39547 18 + 61556512 - 61556613 1 102

GTG ...

VKL ...

39550 18 + 35572868 - 35572939 1 72

ATG ...

MDS ...

39552 18 + 77780103 - 77780315 1 213

CTG ...

LLL ...

39554 18 + 65809478 - 65809558 1 81

GTG ...

VSS ...

39557 1 - 54987930 - 54988052 1 123

GTG ...

VWP ...

39559 18 + 65814899 - 65814961 1 63

TTG ...

LYK ...

39562 18 + 61555791 - 61555850 1 60

GTG ...

VEN ...

39564 18 + 21010738 - 21010785 1 48

GTG ...

VFL ...

39567 18 + 30272925 - 30273014 1 90

CTG ...

LWR ...

39570 18 + 82955554 - 82955610 1 57

ATG ...

MRV ...

39573 18 - 65991328 - 65991387 1 60

CTG ...

LDT ...

39575 18 + 36753441 - 36753656 1 216

TTG ...

LGI ...

39577 1 + 87942401 - 87942472 1 72

GTG ...

VGH ...

39579 18 + 24254561 - 24254725 1 165

GTG ...

VVI ...

39581 18 - 56534182 - 56534235 1 54

CTG ...

LRS ...

39584 18 + 60807979 - 60808014 1 36

CTG ...

LLT ...

39588 18 + 24264330 - 24264536 1 207

TTG ...

LKR ...

39590 18 + 21010747 - 21010785 1 39

CTG ...

LSF ...

39592 18 - 56534182 - 56534271 1 90

TTG ...

LHE ...

Previous 344 Next

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5