Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

39346 1 + 93495627 - 93495683 1 57

CTG ...

LIS ...

39349 17 + 35252835 - 35253055 2 114

GTG ...

VEC ...

39351 17 + 25094743 - 25098938 2 249

CTG ...

LVE ...

39353 17 - 46678450 - 46680849 2 192

CTG ...

LHV ...

39355 17 + 12917804 - 12918049 2 87

CTG ...

LQL ...

39357 17 - 78384813 - 78400679 2 57

GTG ...

VAA ...

39359 17 - 87411214 - 87411598 3 141

GTG ...

VQS ...

39361 17 + 25045557 - 25055621 3 261

GTG ...

VGS ...

39363 17 + 29298597 - 29301450 2 264

CTG ...

LLS ...

39365 1 + 165461472 - 165461525 1 54

CTG ...

LPK ...

39367 17 + 12119375 - 12151758 2 108

CTG ...

LAC ...

39369 17 + 46251433 - 46251714 2 204

CTG ...

LHM ...

39371 1 - 36808238 - 36808273 1 36

CTG ...

LPH ...

39373 17 - 35161140 - 35161569 3 276

TTG ...

LCP ...

39375 17 + 46251373 - 46251714 2 264

TTG ...

LVS ...

39377 17 + 83221062 - 83221483 2 183

GTG ...

VNG ...

39380 1 - 10034824 - 10035111 1 288

GTG ...

VMH ...

39382 17 + 15396417 - 15401771 3 171

GTG ...

VAT ...

39384 17 - 66089342 - 66092003 4 210

ATG ...

MTL ...

39386 17 + 65838917 - 65841020 2 207

GTG ...

VLL ...

39388 1 - 153487529 - 153487591 1 63

TTG ...

LAL ...

39390 17 + 24414679 - 24418116 2 135

TTG ...

LRR ...

39392 17 - 87417800 - 87425661 3 210

GTG ...

VEA ...

39394 17 + 29298636 - 29301450 2 225

CTG ...

LQM ...

39397 17 + 12917825 - 12918049 2 66

TTG ...

LLK ...

39399 17 - 29332707 - 29333525 2 84

CTG ...

LSV ...

39401 17 - 24884550 - 24885532 2 120

ATG ...

MAG ...

39403 17 + 34981979 - 34982662 3 150

TTG ...

LLH ...

39405 17 - 50288657 - 50289099 2 57

ATG ...

MLG ...

39407 17 - 24885605 - 24885801 2 96

TTG ...

LFF ...

39409 17 - 45570368 - 45571973 3 270

TTG ...

LSW ...

39411 17 + 46251457 - 46251714 2 180

CTG ...

LHF ...

39413 17 + 83221029 - 83221483 2 216

CTG ...

LLD ...

39415 1 - 44102290 - 44102352 1 63

CTG ...

LAV ...

39418 17 - 78378729 - 78384852 4 192

CTG ...

LND ...

39420 17 + 13008051 - 13008288 2 123

GTG ...

VSG ...

39422 17 - 87411214 - 87411613 3 156

CTG ...

LSV ...

39424 17 - 24885605 - 24886296 3 150

CTG ...

LPV ...

39426 17 + 26255064 - 26257938 2 75

ATG ...

MTV ...

39428 17 + 28952519 - 28957920 3 93

TTG ...

LEV ...

39430 17 - 87257182 - 87257970 2 168

ATG ...

MAA ...

39432 17 - 24884550 - 24885538 2 126

GTG ...

VTM ...

39434 17 - 70845221 - 70846383 3 264

CTG ...

LAV ...

39436 17 - 87257182 - 87258036 2 234

GTG ...

VSC ...

39438 17 + 83220999 - 83221483 2 246

CTG ...

LAH ...

39440 17 + 24415086 - 24418116 2 156

GTG ...

VEK ...

39442 17 - 35835911 - 35836198 2 165

TTG ...

LAR ...

39444 17 + 12917840 - 12918049 2 51

TTG ...

LGQ ...

39461 18 + 57730783 - 57730941 1 159

CTG ...

LIM ...

39464 18 + 35581973 - 35582140 1 168

GTG ...

VIH ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5