Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

39230 17 + 65838920 - 65841020 2 204

CTG ...

LLA ...

39232 17 - 66079541 - 66080838 2 75

CTG ...

LEK ...

39234 17 - 49472043 - 49473325 2 45

ATG ...

MAG ...

39237 17 + 35252823 - 35253055 2 126

TTG ...

LLS ...

39240 17 + 26255034 - 26257938 3 105

ATG ...

MKP ...

39243 17 - 46678450 - 46680831 2 174

CTG ...

LPA ...

39245 17 - 50283163 - 50286282 4 261

CTG ...

LDI ...

39247 17 + 24415119 - 24418116 2 123

CTG ...

LWP ...

39250 17 - 87417800 - 87422708 2 222

GTG ...

VKI ...

39252 17 - 35836235 - 35836681 2 93

GTG ...

VTA ...

39254 17 + 34985277 - 34985603 3 219

GTG ...

VSQ ...

39258 17 - 35119772 - 35120476 2 117

GTG ...

VGS ...

39260 17 - 50288657 - 50289153 2 111

ATG ...

MFC ...

39262 17 - 27122713 - 27125285 3 267

CTG ...

LPP ...

39265 17 + 46681997 - 46682870 3 267

CTG ...

LVL ...

39267 17 + 29298618 - 29301450 2 243

GTG ...

VPA ...

39269 17 - 50283163 - 50284272 2 99

ATG ...

MLL ...

39271 1 + 172092306 - 172092416 1 111

GTG ...

VVS ...

39273 17 - 65582753 - 65592319 2 30

TTG ...

LKC ...

39275 17 + 29298735 - 29301450 2 126

GTG ...

VAM ...

39277 17 + 25016556 - 25018773 2 57

ATG ...

MQL ...

39280 17 + 48410882 - 48411276 2 36

ATG ...

MKI ...

39283 17 - 46678450 - 46680891 2 234

GTG ...

VDY ...

39285 17 + 80292364 - 80295516 3 126

ATG ...

MET ...

39287 17 + 33910604 - 33911460 2 291

ATG ...

MEG ...

39289 17 - 87442714 - 87446893 3 114

ATG ...

MRS ...

39291 17 + 33829738 - 33838133 2 114

ATG ...

MAA ...

39293 17 + 43588613 - 43589368 2 96

CTG ...

LQA ...

39296 17 - 46244102 - 46244435 3 249

CTG ...

LSS ...

39298 1 + 153447715 - 153447750 1 36

ATG ...

MHQ ...

39300 17 - 24079026 - 24079653 3 279

TTG ...

LDQ ...

39303 17 - 56607744 - 56608731 3 192

CTG ...

LFP ...

39305 17 + 33909558 - 33910440 2 51

GTG ...

VIR ...

39307 17 + 33824676 - 33838133 4 240

CTG ...

LGK ...

39311 1 + 45818189 - 45818296 1 108

CTG ...

LTC ...

39313 17 - 56607744 - 56608773 3 234

GTG ...

VEF ...

39315 1 + 134624821 - 134624865 1 45

CTG ...

LLV ...

39317 17 - 36954528 - 36957969 4 273

CTG ...

LFL ...

39319 17 + 83221014 - 83221483 2 231

CTG ...

LGS ...

39321 17 + 29298660 - 29301450 2 201

CTG ...

LFT ...

39323 17 - 35162913 - 35164771 3 171

TTG ...

LSP ...

39326 1 - 169531338 - 169531394 1 57

ATG ...

MTT ...

39329 1 + 91527721 - 91527783 1 63

CTG ...

LKN ...

39331 17 - 28590057 - 28591303 3 288

CTG ...

LYA ...

39333 17 + 33909513 - 33910440 2 96

GTG ...

VGV ...

39336 1 + 59120125 - 59120268 1 144

CTG ...

LTR ...

39338 17 - 24705697 - 24706164 4 204

ATG ...

MLL ...

39340 17 + 25045536 - 25055621 3 282

CTG ...

LAQ ...

39342 17 + 33910598 - 33911460 2 297

GTG ...

VWM ...

39344 17 - 28977516 - 28979353 2 237

CTG ...

LPV ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5