Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

39123 17 + 65838878 - 65841020 2 246

TTG ...

LLT ...

39125 17 - 33648854 - 33658490 3 114

ATG ...

MTL ...

39127 17 - 80050858 - 80061754 3 225

GTG ...

VEK ...

39129 17 - 50283163 - 50284257 2 84

CTG ...

LEM ...

39131 17 - 49498876 - 49564221 2 75

GTG ...

VPC ...

39133 17 - 56607744 - 56608776 3 237

TTG ...

LVE ...

39135 1 - 118300804 - 118300869 1 66

GTG ...

VVY ...

39137 17 - 87257182 - 87257982 2 180

CTG ...

LMS ...

39140 1 - 86356048 - 86356077 1 30

GTG ...

VDV ...

39142 17 + 46251364 - 46251714 2 273

GTG ...

VAV ...

39144 1 + 75146921 - 75147055 1 135

CTG ...

LNA ...

39146 17 - 35912398 - 35914529 3 114

GTG ...

VVC ...

39149 17 - 35962045 - 35963612 4 267

GTG ...

VFS ...

39151 1 - 178330158 - 178330247 1 90

CTG ...

LFF ...

39153 17 - 50283163 - 50285027 3 210

CTG ...

LES ...

39155 17 - 24885605 - 24885792 2 87

CTG ...

LER ...

39157 17 - 74315927 - 74316128 4 108

TTG ...

LFC ...

39159 17 - 56286586 - 56287834 2 102

CTG ...

LPK ...

39161 1 + 87364114 - 87364257 1 144

CTG ...

LSS ...

39163 17 - 24885605 - 24886299 3 153

CTG ...

LLP ...

39165 17 - 46244102 - 46244483 3 297

TTG ...

LKV ...

39168 17 - 24885605 - 24885783 2 78

GTG ...

VAL ...

39170 17 - 49498876 - 49564257 2 111

GTG ...

VPA ...

39172 17 - 56017540 - 56017922 3 276

CTG ...

LPS ...

39175 17 - 35836235 - 35836639 2 51

ATG ...

MKP ...

39177 17 - 15494465 - 15498192 2 99

CTG ...

LCS ...

39179 17 - 28620420 - 28622038 3 96

GTG ...

VLA ...

39182 17 + 29298582 - 29301450 2 279

TTG ...

LSA ...

39184 17 - 28066936 - 28067847 2 291

CTG ...

LVG ...

39186 17 - 24705697 - 24706146 4 186

TTG ...

LNL ...

39188 17 - 29332707 - 29333812 3 186

CTG ...

LLV ...

39190 17 - 50283163 - 50284275 2 102

ATG ...

MML ...

39192 17 - 24705697 - 24706020 3 144

CTG ...

LAI ...

39194 17 + 13008063 - 13008288 2 111

GTG ...

VQH ...

39196 17 + 65838887 - 65841020 2 237

TTG ...

LAN ...

39198 17 - 50288657 - 50289207 2 165

CTG ...

LSP ...

39200 17 - 24884550 - 24885565 2 153

GTG ...

VHK ...

39202 17 - 15476178 - 15477454 3 168

TTG ...

LTV ...

39204 17 - 33648854 - 33658508 3 132

GTG ...

VSR ...

39206 17 + 43568647 - 43588576 2 153

ATG ...

MLN ...

39208 17 - 50283163 - 50285030 3 213

CTG ...

LLE ...

39210 17 - 74315927 - 74316231 4 108

CTG ...

LPA ...

39212 17 + 25094704 - 25098938 2 288

CTG ...

LDS ...

39214 17 - 46678450 - 46680708 2 51

CTG ...

LAG ...

39216 17 - 70845221 - 70846317 2 198

CTG ...

LAR ...

39218 17 - 40933186 - 40934385 2 33

GTG ...

VTM ...

39221 17 - 36954528 - 36957960 4 264

CTG ...

LLL ...

39223 17 - 70845221 - 70851324 3 294

TTG ...

LWS ...

39226 17 - 24884550 - 24885520 2 108

CTG ...

LSL ...

39228 17 - 46678450 - 46680876 2 219

CTG ...

LKL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5