Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

39017 1 + 90606640 - 90606690 1 51

CTG ...

LCS ...

39019 17 - 36954528 - 36958209 4 297

CTG ...

LPG ...

39021 17 + 24414716 - 24418054 2 36

GTG ...

VAA ...

39023 17 - 10216340 - 10217748 2 153

ATG ...

MAP ...

39025 17 - 28972546 - 28973186 3 273

GTG ...

VSI ...

39027 17 - 50288657 - 50289114 2 72

TTG ...

LLE ...

39029 17 - 33996501 - 33996841 3 57

ATG ...

MLW ...

39032 17 + 25045575 - 25055621 3 243

CTG ...

LRC ...

39034 17 - 35962045 - 35963642 4 297

GTG ...

VRR ...

39036 1 - 23846449 - 23846529 1 81

GTG ...

VLT ...

39038 17 - 24885605 - 24886284 3 138

GTG ...

VQN ...

39040 17 - 65654381 - 65667931 3 189

GTG ...

VPS ...

39042 17 - 24519212 - 24527802 2 72

GTG ...

VGE ...

39044 17 - 56286586 - 56287849 2 117

ATG ...

MVQ ...

39046 17 + 80294545 - 80295516 2 36

TTG ...

LST ...

39048 17 + 65838860 - 65841020 2 264

GTG ...

VHL ...

39050 17 - 28972546 - 28973156 3 243

GTG ...

VSV ...

39053 17 - 66079541 - 66080853 2 90

TTG ...

LMN ...

39055 1 - 171342531 - 171342797 1 267

GTG ...

VLL ...

39057 17 - 35836235 - 35836717 2 129

ATG ...

MNM ...

39059 1 + 38033097 - 38033192 1 96

GTG ...

VEA ...

39061 17 - 15494465 - 15498252 2 159

CTG ...

LLL ...

39064 17 - 65592344 - 65593522 2 111

ATG ...

MIR ...

39066 17 + 23674631 - 23674937 2 99

CTG ...

LQP ...

39068 17 - 45570770 - 45571068 2 81

ATG ...

MPG ...

39071 1 + 63177123 - 63177230 1 108

CTG ...

LGP ...

39073 17 - 56286586 - 56287819 2 87

CTG ...

LLW ...

39075 17 + 43568710 - 43588576 2 90

GTG ...

VLG ...

39077 1 + 59685191 - 59685253 1 63

CTG ...

LFE ...

39079 1 - 4776464 - 4776724 1 261

GTG ...

VPY ...

39081 17 - 70845221 - 70846392 3 273

TTG ...

LQH ...

39083 17 + 53479399 - 53483850 2 240

CTG ...

LEE ...

39085 17 - 87411214 - 87411628 3 171

ATG ...

MTY ...

39088 17 + 12917849 - 12918049 2 42

TTG ...

LAW ...

39090 17 + 25094746 - 25098938 2 246

GTG ...

VEH ...

39092 17 - 87435884 - 87442701 2 57

TTG ...

LQS ...

39094 17 - 70845221 - 70846377 3 258

GTG ...

VTL ...

39096 17 - 65592344 - 65593474 2 63

TTG ...

LLH ...

39098 17 - 24519212 - 24527808 2 78

ATG ...

MPV ...

39100 17 - 24884550 - 24885481 2 69

CTG ...

LWG ...

39102 17 + 65838881 - 65841020 2 243

CTG ...

LTL ...

39104 17 - 28066936 - 28067844 2 288

GTG ...

VGQ ...

39107 1 + 42851322 - 42851471 1 150

GTG ...

VLS ...

39109 1 + 191827192 - 191827485 1 294

TTG ...

LIA ...

39111 17 - 24705697 - 24706161 4 201

CTG ...

LLS ...

39113 17 - 46678450 - 46680747 2 90

CTG ...

LAA ...

39115 17 + 35059270 - 35060165 3 66

CTG ...

LTS ...

39117 17 - 87435884 - 87442713 2 69

CTG ...

LKS ...

39119 17 - 29332707 - 29333588 2 147

CTG ...

LRA ...

39121 17 - 35911467 - 35914605 4 195

CTG ...

LVL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5