Metam
ORF

Logo

ORF Browser

Selected

filters

Database

M.musculus

ORFs

No result matching criteria

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

38904 17 + 46251448 - 46251714 2 189

CTG ...

LLY ...

38906 17 - 29332707 - 29333788 3 162

GTG ...

VNN ...

38908 1 + 172134211 - 172134282 1 72

CTG ...

LAS ...

38910 17 + 33909546 - 33910440 2 63

ATG ...

MRG ...

38913 17 + 43568662 - 43588576 2 138

CTG ...

LSY ...

38915 17 - 36954528 - 36958005 4 240

CTG ...

LGE ...

38917 17 - 35836571 - 35838041 2 48

GTG ...

VHI ...

38920 17 - 15494465 - 15498249 2 156

CTG ...

LLT ...

38922 17 - 87442714 - 87446899 3 120

GTG ...

VFM ...

38924 17 - 66079541 - 66080850 2 87

ATG ...

MNS ...

38927 17 - 50283163 - 50286267 4 246

CTG ...

LFI ...

38929 17 - 64313044 - 64331816 2 96

CTG ...

LEP ...

38931 17 - 50288657 - 50289225 2 183

CTG ...

LRL ...

38933 17 - 27122713 - 27125183 2 165

CTG ...

LSV ...

38935 17 - 50283163 - 50284269 2 96

CTG ...

LLQ ...

38937 17 - 66079541 - 66080865 2 102

TTG ...

LKR ...

38939 17 + 26933403 - 26934337 3 276

CTG ...

LGP ...

38941 17 + 46251370 - 46251714 2 267

GTG ...

VLV ...

38944 17 + 34981964 - 34982662 3 165

CTG ...

LRD ...

38946 17 + 15396513 - 15401771 3 75

GTG ...

VET ...

38948 1 - 93635519 - 93635611 1 93

TTG ...

LRC ...

38950 17 - 28934702 - 28942218 4 255

CTG ...

LQQ ...

38952 17 - 25830986 - 25831145 2 69

GTG ...

VVS ...

38955 17 - 74315927 - 74316234 4 111

CTG ...

LLP ...

38958 17 + 46251388 - 46251714 2 249

GTG ...

VGP ...

38960 1 + 75144962 - 75145120 1 159

CTG ...

LSI ...

38962 17 - 66089342 - 66089501 3 78

TTG ...

LYS ...

38965 1 + 172119500 - 172119610 1 111

TTG ...

LCM ...

38967 1 - 178336998 - 178337243 1 246

CTG ...

LTP ...

38969 17 - 15476178 - 15477445 3 159

TTG ...

LLY ...

38971 1 + 180413808 - 180413864 1 57

ATG ...

MAA ...

38973 17 + 46251424 - 46251714 2 213

CTG ...

LAA ...

38975 17 - 70845221 - 70846365 3 246

ATG ...

MKT ...

38977 1 - 79761560 - 79761610 1 51

CTG ...

LLI ...

38980 17 - 36954528 - 36958155 4 243

GTG ...

VRD ...

38983 17 - 65592344 - 65593528 2 117

TTG ...

LIM ...

38985 17 - 36954528 - 36957972 4 276

TTG ...

LLF ...

38988 17 - 24705697 - 24705996 3 120

GTG ...

VVP ...

38990 17 - 36954528 - 36957981 4 285

TTG ...

LPL ...

38992 17 - 43615845 - 43617218 2 108

GTG ...

VGK ...

38995 17 + 46251376 - 46251714 2 261

GTG ...

VSR ...

38997 17 - 50288657 - 50289237 2 195

CTG ...

LPQ ...

38999 17 - 87417800 - 87422594 2 108

CTG ...

LLK ...

39001 17 - 87417800 - 87425664 3 213

ATG ...

MVE ...

39003 17 + 45695484 - 45696728 2 99

TTG ...

LPS ...

39006 17 - 36954528 - 36958044 4 279

CTG ...

LSA ...

39008 17 - 35119772 - 35120506 2 147

CTG ...

LRR ...

39010 17 + 33829735 - 33838133 2 117

GTG ...

VMA ...

39013 17 - 29332707 - 29333827 3 201

CTG ...

LTY ...

39015 17 - 24885605 - 24886290 3 144

GTG ...

VSV ...

Previous 339 Next

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5