Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

38795 17 - 87422651 - 87427612 3 120

CTG ...

LGH ...

38797 17 - 24705697 - 24705823 2 33

TTG ...

LTS ...

38799 17 - 50287638 - 50287778 2 54

CTG ...

LQS ...

38801 17 + 15396468 - 15401771 3 120

CTG ...

LGG ...

38803 17 - 50283163 - 50284341 2 168

CTG ...

LLT ...

38805 17 - 15476178 - 15477442 3 156

TTG ...

LYS ...

38807 17 + 65838935 - 65841020 2 189

CTG ...

LRQ ...

38809 17 - 66089342 - 66091997 4 204

CTG ...

LKV ...

38811 1 - 128413645 - 128413710 1 66

CTG ...

LMM ...

38813 17 - 46678450 - 46680870 2 213

CTG ...

LSG ...

38815 17 - 87417800 - 87422657 2 171

GTG ...

VLR ...

38818 17 + 34982069 - 34982662 3 60

GTG ...

VAP ...

38820 17 + 80294470 - 80295516 2 111

ATG ...

MAT ...

38822 17 - 70845221 - 70846395 3 276

TTG ...

LLQ ...

38824 1 - 36600077 - 36600166 1 90

CTG ...

LAL ...

38826 17 - 65654381 - 65667901 3 159

ATG ...

MPL ...

38828 17 - 50288116 - 50288638 2 72

CTG ...

LIE ...

38830 17 + 83221056 - 83221483 2 189

GTG ...

VLV ...

38833 17 - 65582753 - 65592325 2 36

GTG ...

VCL ...

38835 17 - 87442714 - 87446830 3 51

CTG ...

LVA ...

38837 17 - 24519212 - 24527811 2 81

ATG ...

MMP ...

38840 17 - 35161140 - 35161512 3 219

GTG ...

VTP ...

38842 17 - 46678450 - 46680843 2 186

GTG ...

VRV ...

38844 17 - 50283163 - 50284290 2 117

ATG ...

MNV ...

38846 1 + 43569211 - 43569342 1 132

GTG ...

VDS ...

38848 1 - 24003149 - 24003283 1 135

TTG ...

LRK ...

38850 17 - 29332707 - 29333836 3 210

GTG ...

VSM ...

38853 17 + 8182415 - 8184462 2 102

TTG ...

LMI ...

38855 17 - 28941250 - 28942223 3 147

TTG ...

LGC ...

38857 17 - 29261336 - 29261824 2 153

CTG ...

LAR ...

38859 17 - 35116335 - 35117745 2 141

GTG ...

VHP ...

38862 17 - 29261336 - 29261875 2 204

CTG ...

LEL ...

38864 17 - 33648854 - 33658520 3 144

TTG ...

LPD ...

38867 17 - 46678450 - 46680750 2 93

CTG ...

LLA ...

38869 17 + 78566153 - 78579377 3 177

GTG ...

VAP ...

38872 17 + 12119392 - 12151703 2 36

ATG ...

MQR ...

38875 17 + 56310833 - 56312118 2 69

ATG ...

MTI ...

38877 17 - 24884550 - 24885604 2 192

ATG ...

MWT ...

38879 17 - 80202175 - 80202768 3 108

GTG ...

VSP ...

38881 17 + 29298651 - 29301450 2 210

GTG ...

VHD ...

38883 17 - 65667962 - 65696289 2 33

GTG ...

VTS ...

38885 17 - 65667962 - 65696304 2 48

TTG ...

LLG ...

38887 1 + 166379415 - 166379480 1 66

GTG ...

VSE ...

38889 17 - 29332707 - 29333519 2 78

GTG ...

VQG ...

38891 17 + 26255070 - 26257938 2 69

GTG ...

VSA ...

38894 17 + 14943314 - 14943601 2 36

GTG ...

VAR ...

38896 1 - 153478862 - 153478954 1 93

CTG ...

LAM ...

38898 17 + 34982015 - 34982662 3 114

CTG ...

LPP ...

38900 17 - 24884550 - 24885514 2 102

TTG ...

LWI ...

38902 17 + 29298690 - 29301450 2 171

TTG ...

LQL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5