Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

38678 17 - 27122713 - 27125177 2 159

GTG ...

VEE ...

38681 17 - 35836235 - 35836711 2 123

ATG ...

MAS ...

38683 17 - 50281215 - 50283153 3 123

TTG ...

LLL ...

38685 17 + 24415137 - 24418116 2 105

GTG ...

VQI ...

38688 17 - 28590057 - 28591312 3 297

CTG ...

LKC ...

38691 17 - 28977516 - 28979299 2 183

GTG ...

VKL ...

38694 17 - 50283163 - 50284251 2 78

ATG ...

MAR ...

38696 17 - 36954528 - 36958014 4 249

ATG ...

MRR ...

38699 17 + 12923370 - 12923581 2 93

CTG ...

LPC ...

38701 17 - 56607744 - 56608722 3 183

GTG ...

VSA ...

38704 17 + 35059249 - 35060165 3 87

CTG ...

LQE ...

38706 17 + 25045545 - 25055621 3 273

CTG ...

LVP ...

38708 17 - 65592344 - 65593513 2 102

ATG ...

MKR ...

38710 1 - 181001795 - 181001944 1 150

TTG ...

LSS ...

38712 17 - 50288657 - 50289102 2 60

TTG ...

LML ...

38714 17 + 15396438 - 15401771 3 150

CTG ...

LAS ...

38716 17 + 24861367 - 24864292 3 228

GTG ...

VEP ...

38718 17 - 46678450 - 46679060 2 63

ATG ...

MEF ...

38721 17 - 87257991 - 87264149 3 108

CTG ...

LRQ ...

38724 17 - 50283163 - 50284305 2 132

CTG ...

LIF ...

38726 1 - 156432160 - 156432291 1 132

TTG ...

LGF ...

38728 17 - 56070243 - 56070967 3 168

GTG ...

VAA ...

38731 17 - 56286586 - 56287840 2 108

ATG ...

MRL ...

38733 17 + 24414697 - 24418116 2 117

CTG ...

LRR ...

38735 17 - 50283163 - 50284323 2 150

GTG ...

VKL ...

38737 17 - 66089342 - 66089543 3 120

TTG ...

LEK ...

38739 17 + 34981958 - 34982662 3 171

GTG ...

VRL ...

38741 17 - 87417800 - 87422654 2 168

CTG ...

LRN ...

38743 17 - 28977516 - 28979326 2 210

TTG ...

LFP ...

38745 17 - 87417800 - 87422591 2 105

CTG ...

LKK ...

38747 17 + 12917816 - 12918049 2 75

TTG ...

LPT ...

38750 17 + 56310821 - 56312118 2 81

ATG ...

MSS ...

38752 17 + 80294494 - 80295516 2 87

CTG ...

LGS ...

38754 17 - 24705697 - 24706158 4 198

TTG ...

LSE ...

38757 17 + 56310830 - 56312118 2 72

ATG ...

MMT ...

38759 17 - 24884550 - 24885454 2 42

ATG ...

MRP ...

38761 17 + 46682003 - 46682870 3 261

CTG ...

LQA ...

38764 17 - 50288657 - 50289111 2 69

TTG ...

LEE ...

38766 17 + 14943305 - 14943601 2 45

CTG ...

LRG ...

38769 17 - 70845221 - 70846371 3 252

CTG ...

LRM ...

38771 17 - 15476178 - 15477448 3 162

GTG ...

VLL ...

38773 17 - 65667962 - 65696301 2 45

CTG ...

LGT ...

38775 17 - 28972546 - 28973171 3 258

GTG ...

VVI ...

38778 17 - 24885605 - 24885777 2 72

TTG ...

LGK ...

38780 17 + 28952525 - 28957920 3 87

GTG ...

VAS ...

38783 17 - 35836235 - 35836651 2 63

CTG ...

LCT ...

38785 17 + 46250415 - 46250710 2 183

CTG ...

LES ...

38788 17 - 24884550 - 24885457 2 45

CTG ...

LMR ...

38790 17 - 46675086 - 46676419 3 171

CTG ...

LTS ...

38792 17 - 57235294 - 57236062 3 213

ATG ...

MPR ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5