Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

38355 17 + 20957047 - 20957157 1 111

TTG ...

LRQ ...

38357 17 - 45589919 - 45589963 1 45

TTG ...

LLV ...

38359 17 + 27032901 - 27032954 1 54

GTG ...

VVC ...

38361 17 - 27581979 - 27582065 1 87

GTG ...

VYV ...

38364 17 - 10282853 - 10282939 1 87

ATG ...

MAV ...

38366 17 + 24895844 - 24896080 1 237

TTG ...

LVP ...

38368 17 - 65594911 - 65594955 1 45

GTG ...

VCG ...

38370 17 - 24885407 - 24885457 1 51

CTG ...

LMR ...

38372 17 - 50283163 - 50283222 1 60

CTG ...

LWT ...

38374 17 + 12916488 - 12916541 1 54

GTG ...

VVA ...

38376 17 + 35243304 - 35243486 1 183

CTG ...

LGQ ...

38378 1 + 180573665 - 180573859 1 195

ATG ...

MGK ...

38381 17 + 47622930 - 47623100 1 171

CTG ...

LLE ...

38383 17 - 75547603 - 75547665 1 63

GTG ...

VSE ...

38385 17 - 29705485 - 29705562 1 78

CTG ...

LSR ...

38387 1 + 171356761 - 171356832 1 72

TTG ...

LEV ...

38389 17 + 34651845 - 34651925 1 81

CTG ...

LGS ...

38392 17 + 28952525 - 28952584 1 60

GTG ...

VAS ...

38394 17 - 10282853 - 10282906 1 54

CTG ...

LTR ...

38396 17 + 35243253 - 35243486 1 234

ATG ...

MWT ...

38398 17 + 24418056 - 24418094 1 39

TTG ...

LQS ...

38400 17 + 27029437 - 27029544 1 108

CTG ...

LSR ...

38402 17 - 45592155 - 45592241 1 87

CTG ...

LPA ...

38405 17 + 20955812 - 20956024 1 213

GTG ...

VEE ...

38407 17 - 35835071 - 35835337 1 267

ATG ...

MSR ...

38409 17 + 46251364 - 46251528 1 165

GTG ...

VAV ...

38411 1 - 178332143 - 178332337 1 195

TTG ...

LNS ...

38413 17 + 46251373 - 46251528 1 156

TTG ...

LVS ...

38415 17 + 27029396 - 27029440 1 45

CTG ...

LLA ...

38417 17 - 70846168 - 70846371 1 204

CTG ...

LRM ...

38419 1 - 92464343 - 92464435 1 93

CTG ...

LPP ...

38421 17 - 56069354 - 56069590 1 237

CTG ...

LGE ...

38423 1 - 172069972 - 172070136 1 165

CTG ...

LAT ...

38425 17 - 64309223 - 64309297 1 75

TTG ...

LSW ...

38427 17 + 46646345 - 46646422 1 78

CTG ...

LAS ...

38429 17 + 79070749 - 79070904 1 156

ATG ...

MAI ...

38431 17 - 34118657 - 34118707 1 51

CTG ...

LGP ...

38433 17 - 87446789 - 87446830 1 42

CTG ...

LVA ...

38435 17 + 35980631 - 35980786 1 156

CTG ...

LRS ...

38438 17 - 35160992 - 35161135 1 144

CTG ...

LEG ...

38440 17 + 75006330 - 75006365 1 36

CTG ...

LQV ...

38442 17 - 50293403 - 50293558 1 156

CTG ...

LSP ...

38444 17 + 47613069 - 47613125 1 57

GTG ...

VDC ...

38447 17 + 46647400 - 46647525 1 126

ATG ...

MSS ...

38449 17 + 46251388 - 46251528 1 141

GTG ...

VGP ...

38451 17 - 50288606 - 50288638 1 33

CTG ...

LIE ...

38453 17 + 72848782 - 72848817 1 36

ATG ...

MYH ...

38455 17 - 56069354 - 56069557 1 204

CTG ...

LAR ...

38457 17 + 33910538 - 33910675 1 138

CTG ...

LPQ ...

38459 17 - 34118657 - 34118821 1 165

CTG ...

LPE ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5