Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

38461 17 + 13007862 - 13007915 1 54

ATG ...

MPL ...

38463 17 - 34603391 - 34603561 1 171

GTG ...

VCL ...

38465 17 - 23763186 - 23763254 1 69

TTG ...

LRA ...

38467 17 - 24700673 - 24700738 1 66

CTG ...

LDF ...

38469 17 - 14950539 - 14950586 1 48

CTG ...

LSK ...

38472 17 + 80294470 - 80294595 1 126

ATG ...

MAT ...

38474 17 - 31273251 - 31273403 1 153

ATG ...

MGP ...

38476 1 + 75211241 - 75211309 1 69

ATG ...

MTR ...

38479 17 + 33911320 - 33911460 1 141

CTG ...

LCF ...

38481 17 + 26676459 - 26676572 1 114

CTG ...

LLG ...

38484 17 + 25048502 - 25048534 1 33

CTG ...

LPF ...

38486 17 + 35882559 - 35882765 1 207

CTG ...

LSR ...

38488 17 - 47687895 - 47688011 1 117

GTG ...

VTV ...

38490 1 + 70724844 - 70724942 1 99

GTG ...

VGH ...

38492 17 - 25883628 - 25883858 1 231

GTG ...

VHL ...

38494 17 + 47618856 - 47619077 1 222

CTG ...

LSC ...

38496 17 + 46646330 - 46646422 1 93

CTG ...

LRS ...

38498 17 - 28979186 - 28979299 1 114

GTG ...

VKL ...

38500 17 + 33913524 - 33913730 1 207

TTG ...

LPE ...

38502 17 + 35892446 - 35892547 1 102

TTG ...

LEV ...

38505 17 + 46646339 - 46646422 1 84

TTG ...

LSL ...

38507 1 - 135125220 - 135125471 1 252

TTG ...

LGT ...

38509 17 + 27029754 - 27029822 1 69

ATG ...

MPL ...

38511 17 + 20954644 - 20954742 1 99

TTG ...

LAL ...

38513 17 - 34116854 - 34117045 1 192

GTG ...

VSN ...

38515 17 - 29339787 - 29339822 1 36

GTG ...

VQF ...

38518 17 - 70846374 - 70846412 1 39

TTG ...

LSF ...

38521 17 + 20955795 - 20955827 1 33

TTG ...

LSH ...

38523 17 + 35883232 - 35883366 1 135

CTG ...

LAA ...

38526 17 + 36857960 - 36858082 1 123

GTG ...

VTF ...

38528 17 + 79064043 - 79064078 1 36

CTG ...

LDR ...

38530 17 + 43607269 - 43607409 1 141

GTG ...

VNE ...

38532 17 - 45589919 - 45589960 1 42

CTG ...

LVF ...

38534 1 - 93629036 - 93629116 1 81

TTG ...

LRT ...

38536 17 - 45419605 - 45419652 1 48

ATG ...

MQI ...

38538 17 + 71578166 - 71578264 1 99

CTG ...

LLG ...

38540 17 + 35888394 - 35888426 1 33

TTG ...

LSK ...

38542 17 + 28237032 - 28237076 1 45

ATG ...

MRM ...

38544 17 - 28603378 - 28603533 1 156

GTG ...

VFE ...

38546 17 + 33847498 - 33847773 1 276

TTG ...

LSH ...

38548 17 + 27029679 - 27029822 1 144

CTG ...

LQL ...

38550 17 - 23763186 - 23763260 1 75

GTG ...

VAL ...

38552 1 + 156051969 - 156051998 1 30

TTG ...

LKM ...

38554 17 + 25133523 - 25133588 1 66

ATG ...

MMR ...

38556 17 + 36857900 - 36858082 1 183

CTG ...

LFP ...

38558 17 + 72846319 - 72846375 1 57

TTG ...

LTI ...

38560 17 - 27580788 - 27580910 1 123

CTG ...

LQC ...

38562 1 - 43153072 - 43153113 1 42

GTG ...

VRS ...

38564 17 + 46251370 - 46251528 1 159

GTG ...

VLV ...

38566 17 - 34119161 - 34119220 1 60

TTG ...

LEM ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5