Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

38253 17 - 64308968 - 64309147 1 180

ATG ...

MGR ...

38255 17 + 24857572 - 24857628 1 57

CTG ...

LLL ...

38257 17 - 34115654 - 34115773 1 120

CTG ...

LEK ...

38259 17 - 50289061 - 50289225 1 165

CTG ...

LRL ...

38261 17 + 71578148 - 71578264 1 117

CTG ...

LCI ...

38263 1 - 175603921 - 175604061 1 141

CTG ...

LGD ...

38265 17 + 26126352 - 26126381 1 30

GTG ...

VQK ...

38267 17 + 13008204 - 13008338 1 135

CTG ...

LWP ...

38269 17 + 15499972 - 15500028 1 57

CTG ...

LAV ...

38271 17 + 24895315 - 24895497 1 183

CTG ...

LPV ...

38273 1 + 172109831 - 172109929 1 99

GTG ...

VPN ...

38275 17 - 34841929 - 34842024 1 96

CTG ...

LLR ...

38278 17 - 35957423 - 35957530 1 108

GTG ...

VVE ...

38280 1 + 84900072 - 84900185 1 114

TTG ...

LAK ...

38282 17 - 35161326 - 35161424 1 99

CTG ...

LQA ...

38284 17 - 15493111 - 15493158 1 48

CTG ...

LQW ...

38286 17 + 34913779 - 34913820 1 42

CTG ...

LLP ...

38288 17 + 29691270 - 29691428 1 159

GTG ...

VGI ...

38290 17 + 28835828 - 28835920 1 93

CTG ...

LDV ...

38292 17 - 15498073 - 15498249 1 177

CTG ...

LLT ...

38294 17 - 87446789 - 87446899 1 111

GTG ...

VFM ...

38296 17 - 35835641 - 35835814 1 174

GTG ...

VWC ...

38298 17 - 34115326 - 34115544 1 219

GTG ...

VPA ...

38300 17 + 25823716 - 25823835 1 120

GTG ...

VRR ...

38302 17 + 27029760 - 27029822 1 63

TTG ...

LSW ...

38304 17 + 43568662 - 43568790 1 129

CTG ...

LSY ...

38306 17 + 24895366 - 24895497 1 132

CTG ...

LLA ...

38308 17 + 33843213 - 33843299 1 87

GTG ...

VLR ...

38310 17 + 35892422 - 35892547 1 126

CTG ...

LEI ...

38312 17 + 35050389 - 35050484 1 96

TTG ...

LPR ...

38314 17 + 33848020 - 33848115 1 96

CTG ...

LTQ ...

38316 17 + 72848689 - 72848736 1 48

ATG ...

MSL ...

38318 1 - 55016775 - 55016876 1 102

ATG ...

MTT ...

38320 17 + 6080826 - 6080855 1 30

CTG ...

LPG ...

38322 17 - 34116854 - 34117129 1 276

CTG ...

LLY ...

38324 17 - 10216160 - 10216231 1 72

ATG ...

MNT ...

38326 17 + 20960562 - 20960675 1 114

GTG ...

VEL ...

38328 17 + 8184406 - 8184462 1 57

CTG ...

LNL ...

38331 17 - 50284213 - 50284341 1 129

CTG ...

LLT ...

38333 17 - 56069354 - 56069536 1 183

CTG ...

LLD ...

38335 17 - 46678302 - 46678382 1 81

CTG ...

LQW ...

38337 17 - 65582645 - 65582680 1 36

GTG ...

VFH ...

38339 17 + 24895228 - 24895497 1 270

TTG ...

LRE ...

38341 17 + 33913605 - 33913730 1 126

GTG ...

VVT ...

38343 17 - 24700868 - 24700969 1 102

GTG ...

VLG ...

38345 17 + 34981921 - 34981971 1 51

TTG ...

LSL ...

38347 17 + 25055651 - 25055761 1 111

CTG ...

LED ...

38349 17 + 29699242 - 29699292 1 51

GTG ...

VKA ...

38351 17 + 25093063 - 25093242 1 180

GTG ...

VEI ...

38353 17 + 69238415 - 69238453 1 39

TTG ...

LAS ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5