Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

37721 17 + 6084549 - 6084608 1 60

TTG ...

LMT ...

37723 1 + 87374039 - 87374143 1 105

TTG ...

LTG ...

37725 17 + 33910475 - 33910675 1 201

TTG ...

LMM ...

37727 17 - 80205254 - 80205319 1 66

GTG ...

VKR ...

37729 17 - 50293333 - 50293473 1 141

CTG ...

LPR ...

37731 17 + 20957035 - 20957157 1 123

GTG ...

VMP ...

37733 17 + 26934254 - 26934337 1 84

CTG ...

LGS ...

37736 17 - 25570546 - 25570641 1 96

GTG ...

VRT ...

37738 17 + 29691264 - 29691428 1 165

CTG ...

LKV ...

37741 17 - 45573163 - 45573237 1 75

TTG ...

LPC ...

37743 17 - 36255930 - 36255989 1 60

CTG ...

LLW ...

37746 17 + 34906744 - 34906881 1 138

CTG ...

LAD ...

37748 17 + 28835837 - 28835920 1 84

CTG ...

LKL ...

37750 17 + 35882553 - 35882765 1 213

GTG ...

VEL ...

37752 17 - 45589919 - 45589969 1 51

CTG ...

LPL ...

37754 17 - 28934749 - 28934802 1 54

TTG ...

LHR ...

37756 17 + 43596908 - 43597000 1 93

CTG ...

LTT ...

37758 17 - 34845645 - 34845734 1 90

GTG ...

VLI ...

37760 17 + 27029772 - 27029822 1 51

CTG ...

LGT ...

37762 17 + 35141507 - 35141734 1 228

TTG ...

LSD ...

37764 17 - 35837998 - 35838093 1 96

TTG ...

LEP ...

37766 17 + 26126307 - 26126381 1 75

CTG ...

LVQ ...

37768 17 + 56312065 - 56312118 1 54

ATG ...

MEW ...

37770 17 - 34603391 - 34603528 1 138

ATG ...

MCV ...

37772 17 - 50288116 - 50288160 1 45

ATG ...

MDL ...

37774 17 - 24885407 - 24885520 1 114

CTG ...

LSL ...

37776 1 + 70724874 - 70724942 1 69

GTG ...

VFS ...

37778 17 + 33910478 - 33910675 1 198

ATG ...

MMT ...

37780 17 - 80061653 - 80061724 1 72

ATG ...

MRE ...

37782 17 - 10318728 - 10318772 1 45

CTG ...

LRD ...

37784 17 + 33847516 - 33847773 1 258

ATG ...

MGS ...

37786 17 - 50284992 - 50285030 1 39

CTG ...

LLE ...

37788 1 + 134424820 - 134424930 1 111

CTG ...

LLH ...

37790 17 - 15526359 - 15526529 1 171

GTG ...

VCL ...

37792 17 + 20956969 - 20957157 1 189

CTG ...

LLA ...

37794 17 - 35957423 - 35957587 1 165

GTG ...

VIV ...

37796 17 + 79070849 - 79070980 1 132

ATG ...

MGQ ...

37798 17 + 20960547 - 20960675 1 129

CTG ...

LLP ...

37801 1 + 75144974 - 75145120 1 147

CTG ...

LWP ...

37803 17 - 31261751 - 31261795 1 45

TTG ...

LDA ...

37805 17 + 13008213 - 13008338 1 126

GTG ...

VPR ...

37808 17 + 34912736 - 34912813 1 78

CTG ...

LHQ ...

37810 17 - 25919482 - 25919523 1 42

GTG ...

VRR ...

37812 17 - 35835641 - 35835766 1 126

ATG ...

MPP ...

37814 17 - 50284213 - 50284275 1 63

ATG ...

MML ...

37816 17 + 24895465 - 24895497 1 33

GTG ...

VRP ...

37818 1 - 67038535 - 67038597 1 63

CTG ...

LQV ...

37820 1 + 191822330 - 191822368 1 39

CTG ...

LAS ...

37822 17 + 27030712 - 27030780 1 69

ATG ...

MLT ...

37824 17 - 24885407 - 24885481 1 75

CTG ...

LWG ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5