Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

37613 17 - 24700868 - 24700954 1 87

CTG ...

LRH ...

37615 17 + 72921222 - 72921329 1 108

GTG ...

VMM ...

37618 17 + 78835599 - 78835646 1 48

GTG ...

VRA ...

37621 17 + 78835617 - 78835646 1 30

ATG ...

MTE ...

37623 17 - 50293491 - 50293544 1 54

GTG ...

VGS ...

37625 17 - 70996760 - 70996804 1 45

TTG ...

LTS ...

37627 17 + 25045536 - 25045652 1 117

CTG ...

LAQ ...

37629 17 - 35835641 - 35835739 1 99

TTG ...

LRT ...

37631 17 + 33910598 - 33910675 1 78

GTG ...

VWM ...

37633 17 - 24700868 - 24700960 1 93

GTG ...

VLL ...

37635 1 - 178333889 - 178333957 1 69

TTG ...

LLS ...

37637 17 + 35882530 - 35882562 1 33

ATG ...

MRR ...

37639 17 - 57024292 - 57024438 1 147

GTG ...

VNT ...

37642 17 - 64308968 - 64309111 1 144

TTG ...

LLE ...

37644 17 + 47618916 - 47619077 1 162

GTG ...

VLM ...

37646 17 - 24704113 - 24704253 1 141

TTG ...

LDV ...

37648 17 + 34982260 - 34982424 1 165

GTG ...

VFW ...

37650 1 + 165461466 - 165461525 1 60

TTG ...

LLL ...

37652 17 + 20957023 - 20957157 1 135

CTG ...

LEA ...

37654 17 - 15526359 - 15526478 1 120

TTG ...

LAP ...

37657 1 + 6244891 - 6244983 1 93

TTG ...

LQN ...

37659 17 + 12919879 - 12919935 1 57

CTG ...

LIN ...

37661 17 - 24724158 - 24724310 1 153

GTG ...

VYP ...

37663 17 - 23763186 - 23763245 1 60

ATG ...

MLW ...

37666 17 + 28237026 - 28237076 1 51

GTG ...

VGM ...

37668 1 + 172318805 - 172318975 1 171

GTG ...

VGP ...

37670 17 - 35161638 - 35161682 1 45

CTG ...

LGT ...

37672 1 - 65024603 - 65024752 1 150

CTG ...

LVQ ...

37674 17 - 10216340 - 10216432 1 93

CTG ...

LPR ...

37676 17 - 23824917 - 23824979 1 63

ATG ...

MTP ...

37679 17 + 34612297 - 34612437 1 141

CTG ...

LTP ...

37681 17 - 24722603 - 24722731 1 129

GTG ...

VPD ...

37683 17 - 65772572 - 65772604 1 33

CTG ...

LGA ...

37686 17 + 29685932 - 29686078 1 147

GTG ...

VLW ...

37688 17 - 10238934 - 10238972 1 39

CTG ...

LWK ...

37690 17 - 34603391 - 34603507 1 117

CTG ...

LRA ...

37692 17 + 27029500 - 27029544 1 45

CTG ...

LLL ...

37694 1 - 54987930 - 54988073 1 144

CTG ...

LNH ...

37696 17 + 36857798 - 36858082 1 285

GTG ...

VKR ...

37698 17 - 64313066 - 64313095 1 30

GTG ...

VQE ...

37700 17 + 29690355 - 29690444 1 90

GTG ...

VGL ...

37702 17 + 33926473 - 33926508 1 36

CTG ...

LLF ...

37704 17 - 56287790 - 56287834 1 45

CTG ...

LPK ...

37706 17 - 24700868 - 24701029 1 162

CTG ...

LLR ...

37709 17 + 69270633 - 69270668 1 36

CTG ...

LQL ...

37711 17 + 28836643 - 28836693 1 51

CTG ...

LSR ...

37713 17 - 50284992 - 50285027 1 36

CTG ...

LES ...

37715 17 + 47618832 - 47619077 1 246

GTG ...

VMH ...

37717 17 + 13013457 - 13013495 1 39

GTG ...

VTL ...

37719 17 - 24705393 - 24705446 1 54

GTG ...

VQH ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5