Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

37505 17 - 45589919 - 45589981 1 63

CTG ...

LCA ...

37510 17 - 50287554 - 50287586 1 33

ATG ...

MLR ...

37512 1 + 179678044 - 179678220 1 177

CTG ...

LEL ...

37514 17 + 20957008 - 20957157 1 150

CTG ...

LPQ ...

37516 17 + 69262171 - 69262233 1 63

CTG ...

LLQ ...

37518 17 - 35119772 - 35119810 1 39

ATG ...

MSR ...

37520 17 + 36856997 - 36857029 1 33

CTG ...

LRD ...

37522 17 + 71578160 - 71578264 1 105

GTG ...

VEL ...

37524 1 + 38033079 - 38033192 1 114

TTG ...

LEI ...

37526 17 + 33818130 - 33818177 1 48

CTG ...

LEW ...

37528 17 - 87446789 - 87446893 1 105

ATG ...

MRS ...

37530 17 + 46251634 - 46251714 1 81

GTG ...

VLP ...

37533 17 + 56999024 - 56999092 1 69

GTG ...

VIC ...

37535 17 - 28607080 - 28607178 1 99

GTG ...

VKI ...

37537 17 + 34037394 - 34037531 1 138

CTG ...

LLL ...

37539 17 - 50284213 - 50284272 1 60

ATG ...

MLL ...

37542 1 + 87440409 - 87440630 1 222

TTG ...

LMK ...

37544 17 - 29261764 - 29261880 1 117

TTG ...

LSW ...

37546 17 - 35835824 - 35835898 1 75

GTG ...

VEA ...

37548 1 + 127412229 - 127412264 1 36

TTG ...

LCM ...

37550 17 - 35162890 - 35163033 1 144

TTG ...

LGE ...

37552 17 + 12920335 - 12920382 1 48

ATG ...

MPE ...

37554 17 + 36857912 - 36858082 1 171

CTG ...

LRP ...

37556 1 + 172082903 - 172082953 1 51

CTG ...

LKD ...

37558 17 - 56069354 - 56069518 1 165

GTG ...

VRA ...

37560 1 - 164457766 - 164457873 1 108

CTG ...

LLS ...

37562 17 + 33825625 - 33825654 1 30

CTG ...

LRY ...

37564 17 - 65613216 - 65613317 1 102

CTG ...

LRC ...

37566 17 + 69207967 - 69208029 1 63

CTG ...

LDQ ...

37568 1 - 36807843 - 36808067 1 225

CTG ...

LSP ...

37570 1 + 45822493 - 45822642 1 150

TTG ...

LGK ...

37572 17 + 44082869 - 44083006 1 138

GTG ...

VAD ...

37575 17 - 80205893 - 80205937 1 45

GTG ...

VDC ...

37577 1 - 93310092 - 93310241 1 150

CTG ...

LLS ...

37579 17 + 36857840 - 36858082 1 243

GTG ...

VWA ...

37581 17 + 56717896 - 56717946 1 51

GTG ...

VSS ...

37583 17 - 33939535 - 33939594 1 60

CTG ...

LGE ...

37585 17 + 24418039 - 24418116 1 78

CTG ...

LLF ...

37588 1 - 67004813 - 67004866 1 54

CTG ...

LQG ...

37590 17 - 84769983 - 84770042 1 60

CTG ...

LQF ...

37592 17 + 25045557 - 25045652 1 96

GTG ...

VGS ...

37594 17 + 34612264 - 34612437 1 174

GTG ...

VRV ...

37596 1 - 135430260 - 135430370 1 111

TTG ...

LKE ...

37598 17 + 27032892 - 27032954 1 63

CTG ...

LSQ ...

37600 17 + 34985468 - 34985542 1 75

CTG ...

LPA ...

37602 17 - 34031342 - 34031398 1 57

TTG ...

LGM ...

37604 17 - 65594911 - 65594940 1 30

GTG ...

VGL ...

37606 17 + 25098813 - 25098938 1 126

GTG ...

VHQ ...

37609 17 + 27032798 - 27033082 1 285

ATG ...

MAC ...

37611 17 + 27029727 - 27029822 1 96

CTG ...

LQL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5