Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

37402 17 - 80205254 - 80205322 1 69

GTG ...

VVK ...

37404 17 - 84776933 - 84777127 1 195

CTG ...

LSQ ...

37406 17 + 12922174 - 12922242 1 69

GTG ...

VAL ...

37408 17 + 35243255 - 35243473 1 219

GTG ...

VDN ...

37410 17 - 34118657 - 34118899 1 243

CTG ...

LRS ...

37412 17 + 20960986 - 20961048 1 63

TTG ...

LCM ...

37414 17 - 35835071 - 35835274 1 204

ATG ...

MSR ...

37416 1 - 178329864 - 178329914 1 51

GTG ...

VAT ...

37419 17 - 35157344 - 35157484 1 141

TTG ...

LRE ...

37421 17 + 35059235 - 35059276 1 42

CTG ...

LKS ...

37423 17 - 75547603 - 75547746 1 144

TTG ...

LLD ...

37425 17 - 78936967 - 78937011 1 45

CTG ...

LWR ...

37427 17 + 27029751 - 27029822 1 72

ATG ...

MMP ...

37429 1 - 84730502 - 84730696 1 195

GTG ...

VDL ...

37431 17 + 25098789 - 25098938 1 150

GTG ...

VDQ ...

37433 17 + 86827910 - 86827996 1 87

GTG ...

VLN ...

37435 17 + 64601506 - 64601556 1 51

CTG ...

LPC ...

37437 17 - 56626564 - 56626836 1 273

CTG ...

LRG ...

37439 1 - 54988016 - 54988054 1 39

ATG ...

MCG ...

37441 17 + 25086976 - 25087062 1 87

CTG ...

LEA ...

37443 17 - 34845645 - 34845746 1 102

GTG ...

VWE ...

37445 17 - 31261751 - 31261816 1 66

CTG ...

LES ...

37447 17 + 33847579 - 33847773 1 195

ATG ...

MSL ...

37449 17 - 27581979 - 27582038 1 60

CTG ...

LED ...

37451 17 + 33847507 - 33847773 1 267

GTG ...

VLR ...

37453 17 + 26126334 - 26126381 1 48

CTG ...

LSR ...

37455 1 + 87440864 - 87440926 1 63

GTG ...

VKE ...

37457 17 - 64309223 - 64309285 1 63

ATG ...

MER ...

37459 17 - 33939570 - 33939683 1 114

CTG ...

LPH ...

37461 17 - 34115326 - 34115526 1 201

GTG ...

VSH ...

37463 17 - 34603391 - 34603555 1 165

CTG ...

LCV ...

37465 17 - 64309223 - 64309264 1 42

CTG ...

LTC ...

37467 17 - 24885407 - 24885538 1 132

GTG ...

VTM ...

37469 17 + 65838920 - 65838976 1 57

CTG ...

LLA ...

37471 17 - 25919482 - 25919538 1 57

GTG ...

VPW ...

37473 17 + 33829755 - 33829820 1 66

GTG ...

VPP ...

37475 17 + 47622906 - 47623100 1 195

GTG ...

VAS ...

37477 17 - 10216340 - 10216393 1 54

CTG ...

LSS ...

37479 17 - 45653464 - 45653691 1 228

GTG ...

VGQ ...

37482 17 - 24700673 - 24700711 1 39

CTG ...

LSP ...

37484 17 + 71578112 - 71578264 1 153

TTG ...

LRQ ...

37487 1 + 87297729 - 87297767 1 39

GTG ...

VSE ...

37489 17 - 70996760 - 70996819 1 60

ATG ...

MCS ...

37491 1 - 178337568 - 178337717 1 150

TTG ...

LAP ...

37493 17 + 65838935 - 65838976 1 42

CTG ...

LRQ ...

37495 17 + 25133427 - 25133588 1 162

ATG ...

MLP ...

37497 17 + 12920770 - 12920808 1 39

TTG ...

LLV ...

37499 17 + 33910502 - 33910675 1 174

CTG ...

LLN ...

37501 17 + 46128584 - 46128649 1 66

GTG ...

VGS ...

37503 17 + 13013574 - 13013627 1 54

CTG ...

LPA ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5