Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

37291 1 - 175612143 - 175612193 1 51

TTG ...

LGE ...

37294 17 - 24885407 - 24885454 1 48

ATG ...

MRP ...

37296 17 + 34911372 - 34911482 1 111

CTG ...

LLQ ...

37298 17 - 56069176 - 56069304 1 129

GTG ...

VER ...

37300 17 + 26123728 - 26123817 1 90

ATG ...

MGS ...

37303 1 - 65032676 - 65032723 1 48

TTG ...

LIS ...

37305 17 - 34116854 - 34117075 1 222

CTG ...

LAP ...

37307 17 + 64601476 - 64601556 1 81

GTG ...

VGT ...

37309 17 - 56287790 - 56287840 1 51

ATG ...

MRL ...

37311 17 - 35162890 - 35163024 1 135

GTG ...

VPA ...

37313 17 - 50284213 - 50284305 1 93

CTG ...

LIF ...

37315 17 + 24895931 - 24896080 1 150

CTG ...

LRA ...

37317 17 + 20955851 - 20956024 1 174

TTG ...

LRA ...

37319 17 - 27581979 - 27582059 1 81

GTG ...

VLI ...

37322 1 - 151500710 - 151500862 1 153

ATG ...

MNI ...

37324 17 + 20958762 - 20958845 1 84

GTG ...

VPA ...

37326 17 - 35959206 - 35959301 1 96

GTG ...

VTF ...

37328 1 + 79776154 - 79776315 1 162

TTG ...

LLQ ...

37330 17 - 78936967 - 78936999 1 33

TTG ...

LPS ...

37332 17 - 87446806 - 87446856 1 51

GTG ...

VER ...

37335 17 - 24884474 - 24884524 1 51

CTG ...

LGA ...

37337 1 + 131153264 - 131153317 1 54

ATG ...

MAA ...

37340 17 + 35121709 - 35121792 1 84

GTG ...

VVR ...

37342 17 - 6741391 - 6741549 1 159

CTG ...

LEE ...

37344 17 - 84769983 - 84770030 1 48

CTG ...

LHC ...

37347 17 + 35264016 - 35264084 1 69

GTG ...

VVL ...

37349 17 - 35162296 - 35162379 1 84

TTG ...

LPL ...

37351 17 - 87435600 - 87435644 1 45

GTG ...

VKK ...

37353 17 + 25050368 - 25050502 1 135

TTG ...

LQE ...

37355 17 + 33916201 - 33916245 1 45

ATG ...

MAA ...

37358 17 + 14399412 - 14399528 1 117

TTG ...

LYI ...

37360 17 + 34037448 - 34037531 1 84

CTG ...

LFF ...

37362 17 + 14399451 - 14399528 1 78

GTG ...

VET ...

37364 1 - 93725153 - 93725284 1 132

TTG ...

LSW ...

37366 17 + 28691630 - 28691779 1 150

GTG ...

VAG ...

37369 17 + 29685899 - 29686078 1 180

GTG ...

VCA ...

37371 1 + 171329501 - 171329530 1 30

ATG ...

MAA ...

37374 17 + 25050354 - 25050404 1 51

TTG ...

LCA ...

37376 17 - 35157344 - 35157448 1 105

TTG ...

LAW ...

37378 17 - 35157344 - 35157487 1 144

CTG ...

LLR ...

37380 17 + 46251664 - 46251714 1 51

GTG ...

VIN ...

37382 17 + 46646318 - 46646422 1 105

CTG ...

LTS ...

37384 17 + 35882478 - 35882765 1 288

CTG ...

LAK ...

37386 17 - 34116854 - 34117126 1 273

CTG ...

LYE ...

37388 17 + 28313816 - 28313845 1 30

ATG ...

MAS ...

37391 17 - 34864721 - 34864852 1 132

GTG ...

VGK ...

37393 17 - 10282853 - 10282918 1 66

GTG ...

VQN ...

37395 17 - 29336214 - 29336285 1 72

ATG ...

MWF ...

37398 17 - 50287554 - 50287604 1 51

GTG ...

VFG ...

37400 17 + 33919901 - 33920092 1 192

CTG ...

LDQ ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5