Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

37188 17 - 35957423 - 35957536 1 114

TTG ...

LWV ...

37190 17 + 24895994 - 24896080 1 87

CTG ...

LNL ...

37192 17 - 28599421 - 28599690 1 270

TTG ...

LKQ ...

37194 17 + 47613030 - 47613125 1 96

CTG ...

LEM ...

37196 17 - 31261751 - 31261801 1 51

TTG ...

LIL ...

37198 1 + 153435875 - 153436090 1 216

CTG ...

LRG ...

37200 17 + 25098825 - 25098938 1 114

CTG ...

LGL ...

37202 17 - 46778440 - 46778478 1 39

GTG ...

VAK ...

37205 17 + 26277552 - 26277638 1 87

GTG ...

VAE ...

37207 17 - 50283124 - 50283153 1 30

TTG ...

LLL ...

37209 17 + 33843216 - 33843299 1 84

CTG ...

LRL ...

37211 1 + 171461282 - 171461368 1 87

ATG ...

MVP ...

37213 1 + 191596187 - 191596408 1 222

GTG ...

VDL ...

37215 1 - 178336998 - 178337057 1 60

GTG ...

VVP ...

37217 1 + 191596193 - 191596408 1 216

CTG ...

LKL ...

37219 17 - 35835824 - 35835889 1 66

CTG ...

LAL ...

37221 1 - 55355623 - 55355685 1 63

GTG ...

VKI ...

37223 17 + 33911311 - 33911460 1 150

GTG ...

VPS ...

37225 17 + 25093108 - 25093242 1 135

CTG ...

LTE ...

37227 17 + 43016633 - 43016797 1 165

GTG ...

VAG ...

37229 17 - 80061653 - 80061685 1 33

GTG ...

VAL ...

37231 1 + 191586537 - 191586665 1 129

CTG ...

LAS ...

37233 17 + 25055645 - 25055761 1 117

GTG ...

VGL ...

37235 17 + 80294503 - 80294595 1 93

GTG ...

VRE ...

37238 17 + 29282205 - 29282321 1 117

CTG ...

LEK ...

37240 17 - 65926328 - 65926375 1 48

CTG ...

LVS ...

37242 17 - 70846168 - 70846251 1 84

ATG ...

MNT ...

37244 17 + 13010523 - 13010558 1 36

ATG ...

MLQ ...

37246 17 + 69270639 - 69270668 1 30

CTG ...

LME ...

37248 17 + 65840916 - 65841020 1 105

CTG ...

LQM ...

37250 17 + 46251409 - 46251528 1 120

CTG ...

LLC ...

37252 17 - 34116854 - 34116973 1 120

CTG ...

LWK ...

37254 17 - 35835641 - 35835727 1 87

ATG ...

MRP ...

37256 1 - 4776464 - 4776727 1 264

CTG ...

LVP ...

37258 17 - 80205254 - 80205298 1 45

ATG ...

MTV ...

37260 17 + 13010568 - 13010609 1 42

GTG ...

VGD ...

37262 1 + 153445849 - 153446001 1 153

CTG ...

LAL ...

37264 17 - 47687230 - 47687262 1 33

TTG ...

LLR ...

37266 17 - 50284213 - 50284317 1 105

TTG ...

LIQ ...

37268 17 - 65613216 - 65613476 1 261

CTG ...

LSG ...

37270 17 + 28823975 - 28824070 1 96

GTG ...

VTN ...

37273 17 - 10318728 - 10318889 1 162

CTG ...

LRS ...

37275 17 + 20956990 - 20957157 1 168

GTG ...

VNI ...

37277 17 + 12920317 - 12920382 1 66

TTG ...

LLL ...

37279 17 + 33910487 - 33910675 1 189

ATG ...

MKM ...

37281 17 - 84776933 - 84777112 1 180

TTG ...

LYA ...

37283 17 - 33939570 - 33939647 1 78

ATG ...

MDP ...

37285 17 + 24864233 - 24864292 1 60

GTG ...

VTT ...

37287 1 + 134411017 - 134411079 1 63

CTG ...

LAC ...

37289 17 + 47612979 - 47613125 1 147

GTG ...

VAE ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5