Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

37078 17 + 74489568 - 74489798 1 231

GTG ...

VRP ...

37080 17 + 46251376 - 46251528 1 153

GTG ...

VSR ...

37082 17 + 34985495 - 34985542 1 48

CTG ...

LLQ ...

37084 17 - 75540078 - 75540155 1 78

GTG ...

VGK ...

37087 17 + 29685857 - 29686078 1 222

CTG ...

LLK ...

37089 17 - 24724158 - 24724214 1 57

GTG ...

VDW ...

37091 17 + 35141516 - 35141734 1 219

CTG ...

LRC ...

37093 1 + 172115050 - 172115211 1 162

CTG ...

LLQ ...

37095 17 + 56717874 - 56717930 1 57

ATG ...

MRS ...

37097 17 + 24860958 - 24861053 1 96

TTG ...

LLL ...

37099 1 + 167365797 - 167365940 1 144

GTG ...

VAA ...

37101 17 - 10216160 - 10216192 1 33

TTG ...

LST ...

37103 17 + 25662638 - 25662703 1 66

CTG ...

LKE ...

37106 17 - 75547603 - 75547728 1 126

CTG ...

LLQ ...

37108 17 - 65926328 - 65926360 1 33

CTG ...

LLR ...

37110 17 - 24704113 - 24704238 1 126

CTG ...

LGP ...

37112 1 - 135123898 - 135124107 1 210

CTG ...

LLY ...

37114 17 + 35881709 - 35881804 1 96

TTG ...

LEE ...

37116 17 + 47622885 - 47623100 1 216

GTG ...

VEY ...

37118 17 + 74489544 - 74489798 1 255

GTG ...

VLA ...

37120 17 - 50284213 - 50284290 1 78

ATG ...

MNV ...

37122 1 - 74927961 - 74928137 1 177

CTG ...

LEP ...

37124 17 + 47613009 - 47613125 1 117

GTG ...

VEL ...

37126 17 - 75538997 - 75539041 1 45

TTG ...

LLT ...

37129 17 - 24527758 - 24527811 1 54

ATG ...

MMP ...

37131 17 + 14399436 - 14399528 1 93

TTG ...

LIR ...

37133 17 + 24860961 - 24861053 1 93

TTG ...

LLA ...

37135 17 - 64308968 - 64309165 1 198

CTG ...

LSL ...

37137 17 - 35835071 - 35835172 1 102

CTG ...

LSS ...

37139 17 + 25133451 - 25133588 1 138

TTG ...

LLS ...

37141 17 - 28507232 - 28507285 1 54

ATG ...

MTE ...

37144 17 - 75538997 - 75539044 1 48

CTG ...

LLL ...

37146 17 - 35692852 - 35692899 1 48

ATG ...

MAA ...

37149 1 + 166388590 - 166388640 1 51

CTG ...

LEL ...

37152 17 + 34906777 - 34906881 1 105

CTG ...

LTL ...

37154 17 + 33941831 - 33941887 1 57

CTG ...

LNL ...

37157 17 - 24700673 - 24700756 1 84

CTG ...

LQA ...

37159 17 + 24896880 - 24896930 1 51

ATG ...

MSS ...

37162 17 + 33910580 - 33910675 1 96

CTG ...

LVS ...

37164 17 + 72848701 - 72848736 1 36

CTG ...

LKT ...

37166 17 - 14956711 - 14956761 1 51

GTG ...

VTS ...

37169 1 - 67004813 - 67004869 1 57

GTG ...

VLQ ...

37171 1 + 172109876 - 172109929 1 54

CTG ...

LLR ...

37173 17 - 70846168 - 70846395 1 228

TTG ...

LLQ ...

37175 17 - 33997089 - 33997118 1 30

CTG ...

LFW ...

37177 17 - 65580736 - 65580804 1 69

CTG ...

LDP ...

37179 17 + 33913473 - 33913730 1 258

CTG ...

LGD ...

37182 17 + 69262165 - 69262233 1 69

CTG ...

LCL ...

37184 17 - 45573163 - 45573219 1 57

TTG ...

LVR ...

37186 17 + 35243262 - 35243486 1 225

ATG ...

MSS ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5