Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

36967 17 - 50284213 - 50284269 1 57

CTG ...

LLQ ...

36969 17 - 33997089 - 33997142 1 54

CTG ...

LSP ...

36971 17 + 20951382 - 20951462 1 81

TTG ...

LAL ...

36973 17 + 13015047 - 13015106 1 60

TTG ...

LTC ...

36975 1 + 165461318 - 165461458 1 141

GTG ...

VTS ...

36977 17 - 45573163 - 45573195 1 33

CTG ...

LYY ...

36980 17 - 35667830 - 35667937 1 108

CTG ...

LGV ...

36982 17 + 12922171 - 12922242 1 72

CTG ...

LVA ...

36984 17 + 72846295 - 72846375 1 81

TTG ...

LSK ...

36986 17 + 25823707 - 25823835 1 129

ATG ...

MTG ...

36989 17 - 50286232 - 50286267 1 36

CTG ...

LFI ...

36991 17 - 34115326 - 34115427 1 102

CTG ...

LHS ...

36993 17 + 36857909 - 36858082 1 174

GTG ...

VLR ...

36995 17 + 26934302 - 26934337 1 36

TTG ...

LGR ...

36997 17 - 80207171 - 80207290 1 120

TTG ...

LQA ...

36999 17 - 34030064 - 34030192 1 129

GTG ...

VEK ...

37001 17 + 84628374 - 84628406 1 33

CTG ...

LFS ...

37004 17 + 46128572 - 46128649 1 78

GTG ...

VGM ...

37006 17 + 23674890 - 23674937 1 48

TTG ...

LPR ...

37008 1 - 118311086 - 118311256 1 171

TTG ...

LRR ...

37011 17 + 26933278 - 26933493 1 216

CTG ...

LSS ...

37013 17 + 25092876 - 25092986 1 111

CTG ...

LDW ...

37015 17 + 33846064 - 33846171 1 108

GTG ...

VAI ...

37017 17 - 27581979 - 27582041 1 63

GTG ...

VLE ...

37019 17 - 15826278 - 15826364 1 87

ATG ...

MSL ...

37022 17 - 35161771 - 35161869 1 99

CTG ...

LPA ...

37024 17 - 34031342 - 34031401 1 60

GTG ...

VLG ...

37026 17 - 24722117 - 24722212 1 96

CTG ...

LGA ...

37028 17 - 49113417 - 49113488 1 72

ATG ...

MKA ...

37030 17 + 35473533 - 35473568 1 36

CTG ...

LWP ...

37032 17 + 56312077 - 56312118 1 42

TTG ...

LSK ...

37035 17 + 33915349 - 33915402 1 54

GTG ...

VAT ...

37038 1 + 127205395 - 127205424 1 30

CTG ...

LMV ...

37040 17 + 33843210 - 33843299 1 90

CTG ...

LVL ...

37042 17 - 84769983 - 84770072 1 90

CTG ...

LRD ...

37044 17 - 24885407 - 24885514 1 108

TTG ...

LWI ...

37046 17 + 25093129 - 25093242 1 114

CTG ...

LSK ...

37048 17 - 64308968 - 64309117 1 150

ATG ...

MAL ...

37050 17 + 35882511 - 35882765 1 255

CTG ...

LEA ...

37052 17 + 33910457 - 33910675 1 219

ATG ...

MTA ...

37054 17 + 12920313 - 12920570 1 258

GTG ...

VLA ...

37056 1 + 69858585 - 69858650 1 66

TTG ...

LKH ...

37058 17 - 35667830 - 35667982 1 153

CTG ...

LSQ ...

37060 17 + 35141501 - 35141734 1 234

GTG ...

VAL ...

37062 17 + 29691354 - 29691428 1 75

CTG ...

LVV ...

37064 17 + 24860964 - 24861053 1 90

CTG ...

LAV ...

37066 1 - 181818829 - 181819002 1 174

CTG ...

LLT ...

37068 17 + 24813044 - 24813085 1 42

CTG ...

LHF ...

37071 17 - 45571014 - 45571064 1 51

CTG ...

LGV ...

37074 17 + 79077553 - 79077663 1 111

CTG ...

LVP ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5