Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

36856 17 - 23763186 - 23763266 1 81

CTG ...

LKV ...

36858 17 + 27029386 - 27029544 1 159

CTG ...

LEV ...

36860 17 - 35959428 - 35959493 1 66

GTG ...

VRF ...

36863 17 - 75547603 - 75547668 1 66

CTG ...

LVS ...

36865 17 - 49113417 - 49113458 1 42

CTG ...

LVG ...

36868 17 + 43016672 - 43016797 1 126

CTG ...

LSR ...

36870 17 + 14325579 - 14325644 1 66

CTG ...

LPK ...

36872 17 - 50289061 - 50289237 1 177

CTG ...

LPQ ...

36874 17 + 47619006 - 47619077 1 72

CTG ...

LVK ...

36876 17 - 84769983 - 84770093 1 111

CTG ...

LID ...

36879 17 + 20956963 - 20957157 1 195

GTG ...

VRL ...

36881 17 - 35162198 - 35162257 1 60

GTG ...

VPK ...

36883 17 - 28979186 - 28979266 1 81

CTG ...

LKK ...

36886 17 - 23763186 - 23763308 1 123

CTG ...

LDS ...

36888 17 + 35881775 - 35881804 1 30

CTG ...

LER ...

36890 17 - 87258816 - 87258866 1 51

CTG ...

LGC ...

36893 1 - 36162157 - 36162333 1 177

CTG ...

LEY ...

36895 17 - 34118657 - 34118887 1 231

GTG ...

VAR ...

36897 1 + 151349382 - 151349417 1 36

ATG ...

MHD ...

36899 17 + 83224200 - 83224277 1 78

CTG ...

LVF ...

36902 17 + 29282139 - 29282321 1 183

GTG ...

VRQ ...

36905 17 - 35835419 - 35835490 1 72

GTG ...

VEA ...

36907 17 + 28237011 - 28237076 1 66

GTG ...

VLC ...

36909 17 - 35667830 - 35667961 1 132

CTG ...

LLL ...

36911 17 + 12920761 - 12920808 1 48

ATG ...

MQK ...

36913 17 + 36857783 - 36858082 1 300

GTG ...

VAK ...

36915 17 - 24705080 - 24705316 1 237

TTG ...

LVA ...

36917 17 - 29261764 - 29261802 1 39

ATG ...

MAP ...

36919 17 + 13007947 - 13008036 1 90

GTG ...

VSL ...

36921 1 + 43954626 - 43954781 1 156

TTG ...

LRN ...

36923 17 - 26244071 - 26244145 1 75

CTG ...

LYS ...

36926 17 - 33939535 - 33939621 1 87

CTG ...

LGP ...

36928 17 + 46251424 - 46251528 1 105

CTG ...

LAA ...

36930 17 + 24895393 - 24895497 1 105

CTG ...

LGR ...

36932 17 + 12922626 - 12922736 1 111

CTG ...

LAN ...

36934 17 - 34118657 - 34118812 1 156

TTG ...

LRG ...

36937 17 - 46247721 - 46247753 1 33

CTG ...

LGP ...

36940 17 + 47618823 - 47619077 1 255

CTG ...

LMY ...

36942 17 - 25883628 - 25883900 1 273

CTG ...

LQD ...

36945 17 - 27580788 - 27580913 1 126

GTG ...

VLQ ...

36947 17 + 20955827 - 20956024 1 198

GTG ...

VRD ...

36949 1 + 134593384 - 134593455 1 72

ATG ...

MIF ...

36951 17 - 65582551 - 65582637 1 87

GTG ...

VQA ...

36953 17 + 29690373 - 29690444 1 72

CTG ...

LYC ...

36955 1 - 191046108 - 191046254 1 147

GTG ...

VEE ...

36957 17 - 35157344 - 35157556 1 213

CTG ...

LVP ...

36959 17 - 50288116 - 50288154 1 39

TTG ...

LSH ...

36961 17 + 25092951 - 25092986 1 36

CTG ...

LAG ...

36963 1 + 75145046 - 75145120 1 75

CTG ...

LDY ...

36965 17 + 46647421 - 46647525 1 105

CTG ...

LPW ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5