Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

36746 17 + 26126349 - 26126381 1 33

GTG ...

VVQ ...

36748 1 - 54988070 - 54988150 1 81

TTG ...

LFT ...

36750 17 + 56998491 - 56998598 1 108

CTG ...

LLS ...

36753 1 + 84900012 - 84900185 1 174

TTG ...

LLW ...

36755 17 - 56287790 - 56287870 1 81

CTG ...

LLR ...

36758 17 + 12920311 - 12920382 1 72

CTG ...

LCL ...

36760 17 - 35120461 - 35120493 1 33

CTG ...

LDF ...

36763 17 - 35835071 - 35835241 1 171

GTG ...

VAS ...

36765 17 + 35888376 - 35888426 1 51

CTG ...

LPV ...

36767 1 - 156432165 - 156432281 1 117

CTG ...

LFL ...

36769 17 - 10238934 - 10238963 1 30

ATG ...

MLR ...

36771 1 - 36146595 - 36146738 1 144

TTG ...

LPN ...

36773 17 + 65832975 - 65833154 1 180

CTG ...

LDQ ...

36775 17 + 35141477 - 35141734 1 258

CTG ...

LRL ...

36777 17 + 35883208 - 35883366 1 159

GTG ...

VFP ...

36779 17 + 35052492 - 35052560 1 69

GTG ...

VLW ...

36781 17 - 33999301 - 33999369 1 69

CTG ...

LVK ...

36783 17 + 14399460 - 14399528 1 69

TTG ...

LAR ...

36785 17 + 35883190 - 35883366 1 177

GTG ...

VRR ...

36787 17 - 66091840 - 66091896 1 57

GTG ...

VHN ...

36789 1 + 59700922 - 59700969 1 48

GTG ...

VDT ...

36791 17 + 64601458 - 64601556 1 99

CTG ...

LQE ...

36794 17 + 72848599 - 72848652 1 54

GTG ...

VKF ...

36796 17 + 25086988 - 25087062 1 75

GTG ...

VAM ...

36798 17 + 29691306 - 29691428 1 123

GTG ...

VNI ...

36800 17 + 33919937 - 33920092 1 156

ATG ...

MQV ...

36803 17 - 35835419 - 35835574 1 156

CTG ...

LTF ...

36805 17 - 35158892 - 35159104 1 213

CTG ...

LPP ...

36807 17 - 34115326 - 34115511 1 186

CTG ...

LYT ...

36809 17 + 26629564 - 26629620 1 57

TTG ...

LTS ...

36811 17 - 64308824 - 64308916 1 93

TTG ...

LVL ...

36814 17 + 24857536 - 24857628 1 93

ATG ...

MPV ...

36816 17 - 15477311 - 15477412 1 102

CTG ...

LCT ...

36818 17 - 66101397 - 66101450 1 54

CTG ...

LRA ...

36820 17 - 34846023 - 34846073 1 51

CTG ...

LHP ...

36822 17 - 6742686 - 6742745 1 60

GTG ...

VQQ ...

36824 17 + 65838878 - 65838976 1 99

TTG ...

LLT ...

36826 17 + 35055244 - 35055453 1 210

CTG ...

LKA ...

36828 17 + 29701047 - 29701094 1 48

GTG ...

VPT ...

36830 17 + 46251652 - 46251714 1 63

CTG ...

LPV ...

36832 17 + 35121697 - 35121792 1 96

ATG ...

MRR ...

36834 17 + 46125299 - 46125484 1 186

TTG ...

LLS ...

36836 17 + 24864203 - 24864292 1 90

GTG ...

VQQ ...

36839 17 - 45419605 - 45419655 1 51

TTG ...

LMQ ...

36842 17 - 34030064 - 34030195 1 132

GTG ...

VVE ...

36844 17 + 86823740 - 86823826 1 87

ATG ...

MCG ...

36846 1 - 43141659 - 43141817 1 159

GTG ...

VEA ...

36849 17 - 34030558 - 34030719 1 162

GTG ...

VLI ...

36851 17 + 34905621 - 34905719 1 99

GTG ...

VGS ...

36853 17 - 46737190 - 46737219 1 30

CTG ...

LNS ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5