Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

36633 17 + 25098804 - 25098938 1 135

GTG ...

VDT ...

36636 17 - 34603391 - 34603522 1 132

GTG ...

VCL ...

36638 1 + 167308817 - 167308867 1 51

GTG ...

VLS ...

36640 17 - 50293491 - 50293550 1 60

GTG ...

VAV ...

36642 17 - 34864721 - 34864837 1 117

GTG ...

VDW ...

36644 17 - 80061653 - 80061754 1 102

GTG ...

VEK ...

36647 17 - 24700868 - 24700957 1 90

CTG ...

LLR ...

36649 17 + 12920308 - 12920382 1 75

ATG ...

MLC ...

36651 17 + 12924235 - 12924330 1 96

CTG ...

LTP ...

36653 17 + 35141453 - 35141734 1 282

TTG ...

LIN ...

36656 17 + 56721410 - 56721445 1 36

CTG ...

LRG ...

36659 17 - 35958991 - 35959131 1 141

GTG ...

VGP ...

36661 17 + 34612399 - 34612437 1 39

CTG ...

LKK ...

36663 17 + 33818148 - 33818177 1 30

CTG ...

LRP ...

36665 17 + 46128509 - 46128649 1 141

CTG ...

LTR ...

36668 17 - 34030064 - 34030228 1 165

CTG ...

LWV ...

36670 17 - 34116854 - 34116997 1 144

CTG ...

LHK ...

36672 17 - 35161140 - 35161169 1 30

TTG ...

LEG ...

36674 17 + 25645267 - 25645320 1 54

TTG ...

LDG ...

36677 17 + 34985462 - 34985542 1 81

GTG ...

VQL ...

36679 17 + 12916476 - 12916541 1 66

GTG ...

VVP ...

36681 17 - 35160420 - 35160581 1 162

GTG ...

VAG ...

36683 17 - 34118657 - 34118848 1 192

CTG ...

LSP ...

36685 17 - 24703234 - 24703299 1 66

GTG ...

VAC ...

36688 1 + 45814688 - 45814720 1 33

CTG ...

LWN ...

36690 17 - 31946724 - 31946795 1 72

GTG ...

VSS ...

36692 17 - 15494408 - 15494464 1 57

GTG ...

VKD ...

36694 17 + 33847567 - 33847773 1 207

GTG ...

VVA ...

36696 1 - 66801045 - 66801146 1 102

CTG ...

LLS ...

36698 17 + 35141486 - 35141734 1 249

CTG ...

LGN ...

36700 17 + 35121736 - 35121792 1 57

TTG ...

LGC ...

36702 17 - 28608691 - 28608741 1 51

CTG ...

LHP ...

36705 1 - 66801045 - 66801293 1 249

CTG ...

LSN ...

36707 17 - 70846168 - 70846365 1 198

ATG ...

MKT ...

36709 17 + 25092780 - 25092986 1 207

CTG ...

LLK ...

36712 17 - 35162890 - 35162946 1 57

ATG ...

MER ...

36714 17 - 84748957 - 84749043 1 87

CTG ...

LHE ...

36716 17 + 35243291 - 35243473 1 183

GTG ...

VET ...

36718 17 + 6080830 - 6080898 1 69

CTG ...

LGK ...

36720 17 + 12922140 - 12922358 1 219

CTG ...

LAT ...

36722 17 + 56717862 - 56717930 1 69

TTG ...

LNL ...

36724 17 + 34906810 - 34906881 1 72

GTG ...

VGL ...

36727 17 + 33847601 - 33847630 1 30

CTG ...

LQP ...

36729 1 - 178331189 - 178331257 1 69

ATG ...

MCL ...

36731 17 + 35052483 - 35052560 1 78

CTG ...

LFM ...

36733 17 - 66519399 - 66519578 1 180

ATG ...

MRA ...

36736 17 - 27580788 - 27580892 1 105

GTG ...

VQA ...

36739 17 + 26933431 - 26933493 1 63

CTG ...

LHA ...

36741 17 + 80224560 - 80224598 1 39

ATG ...

MAA ...

36744 17 - 35162296 - 35162367 1 72

ATG ...

MAC ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5