Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

36519 17 + 32060476 - 32060541 1 66

CTG ...

LSP ...

36521 17 + 34985478 - 34985603 1 126

ATG ...

MRW ...

36524 17 + 28237038 - 28237076 1 39

ATG ...

MGL ...

36526 1 - 24003149 - 24003193 1 45

CTG ...

LED ...

36528 17 + 46646309 - 46646422 1 114

CTG ...

LCA ...

36531 17 - 35836235 - 35836264 1 30

ATG ...

MSL ...

36533 17 + 46125293 - 46125484 1 192

GTG ...

VLL ...

36535 17 + 47612964 - 47613125 1 162

GTG ...

VSQ ...

36537 17 - 24527758 - 24527808 1 51

ATG ...

MPV ...

36540 17 + 35055253 - 35055453 1 201

CTG ...

LKV ...

36542 17 + 33818100 - 33818177 1 78

ATG ...

MPR ...

36545 17 + 24895423 - 24895497 1 75

CTG ...

LWQ ...

36547 17 - 31987351 - 31987383 1 33

CTG ...

LDL ...

36550 17 + 20960481 - 20960675 1 195

CTG ...

LNI ...

36552 17 - 65593436 - 65593474 1 39

TTG ...

LLH ...

36554 1 + 45327628 - 45327657 1 30

CTG ...

LPG ...

36556 1 + 88227047 - 88227151 1 105

ATG ...

MQG ...

36558 17 - 70846168 - 70846377 1 210

GTG ...

VTL ...

36560 1 + 128103374 - 128103478 1 105

ATG ...

MGL ...

36563 17 - 28941250 - 28941336 1 87

CTG ...

LAR ...

36566 17 - 35691439 - 35691474 1 36

GTG ...

VEL ...

36569 17 + 27343939 - 27343998 1 60

ATG ...

MLW ...

36572 17 - 35834948 - 35835058 1 111

CTG ...

LST ...

36574 17 - 34118657 - 34118941 1 285

TTG ...

LTT ...

36576 17 + 13007992 - 13008036 1 45

CTG ...

LRA ...

36578 17 - 49476444 - 49476530 1 87

ATG ...

MKL ...

36581 17 - 10216340 - 10216423 1 84

CTG ...

LLQ ...

36583 1 + 171461279 - 171461368 1 90

ATG ...

MMV ...

36585 17 - 56069354 - 56069506 1 153

CTG ...

LDR ...

36587 17 - 15498073 - 15498252 1 180

CTG ...

LLL ...

36589 17 + 35058421 - 35058453 1 33

TTG ...

LPP ...

36591 17 + 28836652 - 28836693 1 42

GTG ...

VRG ...

36593 1 + 191827288 - 191827485 1 198

GTG ...

VLS ...

36595 17 + 47619009 - 47619077 1 69

GTG ...

VKV ...

36597 17 + 35055274 - 35055453 1 180

CTG ...

LTS ...

36599 17 + 35059223 - 35059276 1 54

GTG ...

VGP ...

36601 17 + 46251433 - 46251528 1 96

CTG ...

LHM ...

36604 1 - 55012098 - 55012145 1 48

CTG ...

LVP ...

36607 17 + 12920320 - 12920382 1 63

CTG ...

LLN ...

36609 17 + 25045575 - 25045652 1 78

CTG ...

LRC ...

36611 17 + 36837527 - 36837562 1 36

ATG ...

MTF ...

36613 17 - 80205254 - 80205412 1 159

TTG ...

LNY ...

36616 17 + 34037439 - 34037531 1 93

CTG ...

LEH ...

36618 17 - 24527758 - 24527802 1 45

GTG ...

VGE ...

36620 17 + 33848032 - 33848115 1 84

TTG ...

LIR ...

36622 17 + 29685860 - 29686078 1 219

CTG ...

LKE ...

36625 17 - 10216340 - 10216405 1 66

CTG ...

LGL ...

36627 17 + 29690394 - 29690444 1 51

GTG ...

VCL ...

36629 17 - 50287554 - 50287583 1 30

CTG ...

LRL ...

36631 17 + 35121730 - 35121792 1 63

GTG ...

VCL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5