Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

36399 17 + 26933359 - 26933493 1 135

TTG ...

LAA ...

36401 17 - 6742686 - 6742781 1 96

CTG ...

LYM ...

36403 17 - 35162296 - 35162343 1 48

TTG ...

LPL ...

36405 1 + 93507027 - 93507086 1 60

GTG ...

VTV ...

36407 17 + 28835843 - 28835920 1 78

CTG ...

LGE ...

36410 17 - 24700868 - 24700912 1 45

GTG ...

VRG ...

36412 17 - 35162890 - 35162961 1 72

CTG ...

LPR ...

36414 17 + 33925437 - 33925724 1 288

CTG ...

LPL ...

36416 17 - 35835911 - 35836033 1 123

CTG ...

LGQ ...

36418 17 - 34030558 - 34030644 1 87

CTG ...

LLQ ...

36420 17 - 29261764 - 29261856 1 93

ATG ...

MRP ...

36423 17 - 35835641 - 35835790 1 150

CTG ...

LIP ...

36425 17 + 20960508 - 20960675 1 168

GTG ...

VNE ...

36427 17 + 33956027 - 33956080 1 54

TTG ...

LLR ...

36430 17 - 33939535 - 33939612 1 78

GTG ...

VLV ...

36432 1 + 43569265 - 43569342 1 78

GTG ...

VEH ...

36435 17 - 33996604 - 33996642 1 39

CTG ...

LIC ...

36437 17 + 36837512 - 36837562 1 51

GTG ...

VSG ...

36440 17 + 29694273 - 29694308 1 36

CTG ...

LAK ...

36442 17 + 32060440 - 32060541 1 102

CTG ...

LKT ...

36447 17 - 34030558 - 34030632 1 75

CTG ...

LLS ...

36449 17 - 35667830 - 35667973 1 144

GTG ...

VDF ...

36452 1 + 75145025 - 75145120 1 96

CTG ...

LEP ...

36455 17 + 34037397 - 34037531 1 135

CTG ...

LLR ...

36458 17 + 72846331 - 72846375 1 45

GTG ...

VVP ...

36460 17 + 20958804 - 20958845 1 42

GTG ...

VRA ...

36463 17 + 34985460 - 34985603 1 144

ATG ...

MCS ...

36466 17 + 26277588 - 26277638 1 51

TTG ...

LRR ...

36468 17 + 43016651 - 43016797 1 147

ATG ...

MGS ...

36470 17 + 35882502 - 35882765 1 264

CTG ...

LED ...

36472 17 + 14325606 - 14325644 1 39

CTG ...

LCL ...

36474 17 - 35957423 - 35957527 1 105

GTG ...

VEE ...

36477 17 - 70846168 - 70846317 1 150

CTG ...

LAR ...

36479 1 + 105664444 - 105664641 1 198

CTG ...

LHT ...

36481 17 + 12916491 - 12916541 1 51

GTG ...

VAV ...

36483 1 + 85905237 - 85905320 1 84

CTG ...

LWC ...

36485 17 + 32060437 - 32060541 1 105

GTG ...

VLK ...

36487 17 + 43568647 - 43568790 1 144

ATG ...

MLN ...

36489 17 - 34864721 - 34864843 1 123

CTG ...

LDV ...

36492 17 - 24885407 - 24885565 1 159

GTG ...

VHK ...

36494 17 - 34603391 - 34603540 1 150

GTG ...

VLV ...

36496 1 + 167367452 - 167367499 1 48

CTG ...

LKT ...

36498 17 - 50289061 - 50289207 1 147

CTG ...

LSP ...

36500 17 - 28598934 - 28598966 1 33

TTG ...

LSQ ...

36502 17 + 35243313 - 35243486 1 174

ATG ...

MGP ...

36505 17 + 34905612 - 34905719 1 108

GTG ...

VNG ...

36508 17 - 24724158 - 24724238 1 81

TTG ...

LTK ...

36511 17 + 29301412 - 29301450 1 39

TTG ...

LVI ...

36514 17 + 35473530 - 35473568 1 39

CTG ...

LLW ...

36517 1 - 178330158 - 178330334 1 177

GTG ...

VVD ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5