Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

36282 17 - 66101397 - 66101456 1 60

TTG ...

LAL ...

36284 17 + 65833056 - 65833154 1 99

CTG ...

LPG ...

36286 17 - 24722117 - 24722158 1 42

CTG ...

LEE ...

36289 17 + 46125296 - 46125484 1 189

TTG ...

LLL ...

36292 17 - 33939535 - 33939651 1 117

CTG ...

LDG ...

36294 17 + 25093201 - 25093242 1 42

CTG ...

LVK ...

36296 17 + 74489514 - 74489798 1 285

CTG ...

LSG ...

36298 17 + 33829692 - 33829820 1 129

GTG ...

VGP ...

36300 1 - 178330158 - 178330277 1 120

GTG ...

VEL ...

36302 17 + 35121712 - 35121792 1 81

GTG ...

VRD ...

36304 17 + 12922183 - 12922242 1 60

ATG ...

MIC ...

36306 17 + 26933329 - 26933493 1 165

CTG ...

LST ...

36309 17 - 24705080 - 24705313 1 234

GTG ...

VAF ...

36312 17 + 24895928 - 24896080 1 153

CTG ...

LLR ...

36314 17 - 64313044 - 64313097 1 54

CTG ...

LCK ...

36317 17 + 34912697 - 34912813 1 117

CTG ...

LCD ...

36319 17 + 26266349 - 26266402 1 54

CTG ...

LAE ...

36321 17 - 75547603 - 75547743 1 141

TTG ...

LDD ...

36324 17 + 23673641 - 23673763 1 123

GTG ...

VAL ...

36326 17 + 69262183 - 69262233 1 51

TTG ...

LVQ ...

36329 17 - 15477311 - 15477400 1 90

TTG ...

LTQ ...

36332 17 + 33925464 - 33925724 1 261

ATG ...

MQC ...

36334 17 + 13008264 - 13008338 1 75

ATG ...

MAR ...

36336 17 - 50288657 - 50288701 1 45

ATG ...

MKP ...

36338 17 + 43607281 - 43607409 1 129

CTG ...

LYS ...

36340 17 - 49113417 - 49113530 1 114

ATG ...

MRA ...

36343 17 - 33999301 - 33999366 1 66

GTG ...

VKQ ...

36346 17 - 66091860 - 66091922 1 63

ATG ...

MQG ...

36348 17 + 6084573 - 6084608 1 36

TTG ...

LPS ...

36351 17 + 36858038 - 36858082 1 45

CTG ...

LWL ...

36353 17 - 24885715 - 24885783 1 69

GTG ...

VAL ...

36355 17 + 72848695 - 72848736 1 42

TTG ...

LLL ...

36358 17 + 35892452 - 35892547 1 96

GTG ...

VAP ...

36360 17 + 25133454 - 25133588 1 135

TTG ...

LSL ...

36363 17 + 12920779 - 12920808 1 30

TTG ...

LTS ...

36365 17 - 35836235 - 35836273 1 39

GTG ...

VAS ...

36367 1 + 87297714 - 87297767 1 54

ATG ...

MSP ...

36369 17 - 34118657 - 34118932 1 276

GTG ...

VSS ...

36371 17 - 34030558 - 34030731 1 174

CTG ...

LGA ...

36373 1 + 172097706 - 172097813 1 108

GTG ...

VES ...

36375 1 + 90606568 - 90606690 1 123

TTG ...

LDS ...

36377 17 - 34845645 - 34845695 1 51

CTG ...

LSA ...

36380 17 + 25086877 - 25087062 1 186

GTG ...

VKT ...

36382 17 - 24885715 - 24885792 1 78

CTG ...

LER ...

36384 17 + 69207979 - 69208029 1 51

CTG ...

LQV ...

36386 17 + 29702207 - 29702287 1 81

GTG ...

VTP ...

36388 17 + 15499969 - 15500028 1 60

CTG ...

LLA ...

36391 17 + 34850944 - 34850997 1 54

GTG ...

VKR ...

36394 1 + 36692214 - 36692264 1 51

GTG ...

VSP ...

36397 17 - 47687230 - 47687259 1 30

CTG ...

LRE ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5