Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

36160 17 - 31273251 - 31273379 1 129

ATG ...

MSK ...

36163 17 - 56069176 - 56069295 1 120

CTG ...

LSS ...

36166 1 + 172129275 - 172129364 1 90

CTG ...

LVE ...

36168 17 + 13013571 - 13013627 1 57

TTG ...

LLP ...

36170 17 + 24895207 - 24895497 1 291

CTG ...

LAR ...

36172 17 + 29681933 - 29682058 1 126

CTG ...

LDG ...

36175 17 - 46678302 - 46678373 1 72

CTG ...

LSG ...

36178 17 + 25055585 - 25055761 1 177

GTG ...

VDS ...

36180 17 + 34911586 - 34911669 1 84

CTG ...

LQL ...

36183 17 + 36857822 - 36858082 1 261

CTG ...

LRP ...

36185 17 + 29691252 - 29691428 1 177

GTG ...

VCK ...

36187 17 - 47501302 - 47501337 1 36

TTG ...

LRV ...

36190 17 + 29700244 - 29700285 1 42

GTG ...

VYR ...

36192 1 + 72712199 - 72712228 1 30

GTG ...

VAG ...

36195 1 - 144002948 - 144003031 1 84

TTG ...

LSY ...

36197 17 + 86827913 - 86827996 1 84

CTG ...

LNP ...

36199 17 - 33997089 - 33997121 1 33

TTG ...

LLF ...

36202 17 + 27032843 - 27033082 1 240

ATG ...

MRA ...

36204 17 + 33846073 - 33846171 1 99

GTG ...

VCP ...

36208 17 - 35837998 - 35838210 1 213

GTG ...

VLA ...

36210 17 + 20960499 - 20960675 1 177

CTG ...

LDC ...

36212 17 - 50286232 - 50286282 1 51

CTG ...

LDI ...

36215 17 + 24895339 - 24895497 1 159

GTG ...

VRR ...

36217 17 + 34612270 - 34612437 1 168

GTG ...

VLP ...

36219 17 - 34031342 - 34031392 1 51

ATG ...

MRW ...

36221 17 - 33677394 - 33677441 1 48

GTG ...

VKN ...

36223 17 - 34030064 - 34030171 1 108

GTG ...

VKG ...

36225 17 + 12119375 - 12119419 1 45

CTG ...

LAC ...

36228 17 - 35162913 - 35163020 1 108

CTG ...

LQD ...

36230 17 + 28237014 - 28237076 1 63

CTG ...

LCS ...

36233 1 - 20806694 - 20806801 1 108

GTG ...

VDL ...

36235 17 - 78400626 - 78400679 1 54

GTG ...

VAA ...

36238 17 - 35835071 - 35835256 1 186

GTG ...

VTS ...

36240 17 + 26126283 - 26126381 1 99

CTG ...

LFK ...

36243 17 + 74489508 - 74489798 1 291

ATG ...

MVL ...

36245 17 - 29705485 - 29705541 1 57

CTG ...

LEA ...

36248 1 + 74527637 - 74527687 1 51

CTG ...

LKH ...

36250 17 + 13013505 - 13013627 1 123

CTG ...

LWE ...

36252 17 + 34036370 - 34036459 1 90

CTG ...

LFT ...

36256 17 - 78931313 - 78931375 1 63

CTG ...

LRA ...

36259 17 + 25050339 - 25050404 1 66

GTG ...

VSP ...

36261 17 - 34118657 - 34118710 1 54

ATG ...

MLG ...

36263 17 + 69207985 - 69208029 1 45

GTG ...

VET ...

36265 17 - 10216340 - 10216399 1 60

CTG ...

LRL ...

36267 17 + 33847537 - 33847773 1 237

CTG ...

LPF ...

36269 17 + 25093204 - 25093242 1 39

GTG ...

VKR ...

36272 17 + 35243405 - 35243473 1 69

CTG ...

LLR ...

36275 17 + 24895288 - 24895497 1 210

CTG ...

LTR ...

36277 17 + 12922668 - 12922736 1 69

TTG ...

LGQ ...

36279 17 - 35959428 - 35959586 1 159

CTG ...

LTR ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5