Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

36035 17 - 35161330 - 35161569 1 240

TTG ...

LCP ...

36038 17 + 34612273 - 34612437 1 165

CTG ...

LPP ...

36041 17 - 10216271 - 10216312 1 42

CTG ...

LSC ...

36043 17 - 28590057 - 28590236 1 180

CTG ...

LKH ...

36046 17 + 36858026 - 36858082 1 57

CTG ...

LVP ...

36049 17 + 43016687 - 43016797 1 111

CTG ...

LLS ...

36052 17 + 27032904 - 27032954 1 51

GTG ...

VCP ...

36054 17 + 47619015 - 47619077 1 63

GTG ...

VGT ...

36057 1 - 134234265 - 134234387 1 123

CTG ...

LSA ...

36059 1 + 153447917 - 153447958 1 42

GTG ...

VRS ...

36061 17 + 35059217 - 35059276 1 60

CTG ...

LGV ...

36064 17 - 24700673 - 24700729 1 57

CTG ...

LWH ...

36066 17 - 70846168 - 70846383 1 216

CTG ...

LAV ...

36069 1 - 36445083 - 36445256 1 174

ATG ...

MKG ...

36071 17 - 23763186 - 23763293 1 108

CTG ...

LKR ...

36074 17 - 28599421 - 28599594 1 174

GTG ...

VCQ ...

36077 17 + 29691372 - 29691428 1 57

GTG ...

VIK ...

36080 17 + 26255064 - 26255129 1 66

ATG ...

MTV ...

36083 17 + 29702239 - 29702295 1 57

CTG ...

LSK ...

36085 1 - 86359217 - 86359264 1 48

CTG ...

LLA ...

36087 17 + 28952519 - 28952584 1 66

TTG ...

LEV ...

36090 17 + 47622903 - 47623100 1 198

GTG ...

VVA ...

36093 17 + 35882541 - 35882765 1 225

CTG ...

LFG ...

36096 17 - 66091840 - 66091911 1 72

TTG ...

LHK ...

36099 17 - 24700868 - 24700930 1 63

CTG ...

LLA ...

36101 17 + 35121679 - 35121792 1 114

GTG ...

VRS ...

36104 17 + 12920790 - 12920870 1 81

CTG ...

LQK ...

36107 17 + 47618925 - 47619077 1 153

GTG ...

VKL ...

36109 1 - 162740321 - 162740470 1 150

TTG ...

LAV ...

36111 17 + 35888382 - 35888426 1 45

GTG ...

VDP ...

36113 17 - 24885715 - 24885801 1 87

TTG ...

LFF ...

36115 17 - 35835071 - 35835262 1 192

CTG ...

LSV ...

36117 17 - 35162913 - 35163068 1 156

CTG ...

LPT ...

36119 17 - 34113833 - 34114102 1 270

TTG ...

LPP ...

36122 17 - 34118657 - 34118695 1 39

GTG ...

VRG ...

36124 17 + 43604584 - 43604652 1 69

TTG ...

LMG ...

36126 17 + 65840895 - 65841020 1 126

GTG ...

VEQ ...

36128 17 + 26629576 - 26629620 1 45

ATG ...

MRW ...

36131 17 + 20956978 - 20957157 1 180

GTG ...

VEA ...

36133 17 + 24895384 - 24895497 1 114

TTG ...

LFG ...

36135 17 + 33843198 - 33843299 1 102

GTG ...

VAL ...

36137 17 + 33846094 - 33846171 1 78

GTG ...

VMG ...

36140 17 + 33910604 - 33910675 1 72

ATG ...

MEG ...

36143 17 - 56626564 - 56626800 1 237

CTG ...

LSP ...

36145 1 + 87264535 - 87264618 1 84

CTG ...

LHP ...

36147 17 + 33847576 - 33847773 1 198

CTG ...

LMS ...

36149 17 + 30717826 - 30717858 1 33

GTG ...

VAT ...

36152 17 - 28591169 - 28591282 1 114

CTG ...

LII ...

36154 17 - 24079026 - 24079124 1 99

CTG ...

LMD ...

36157 17 - 25570546 - 25570617 1 72

GTG ...

VAT ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5