Metam
ORF

Logo

ORF Browser

Selected

filters

Database

M.musculus

ORFs

No result matching criteria

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

35722 1 + 86599108 - 86599209 1 102

CTG ...

LDQ ...

35724 16 + 20677712 - 20678816 3 195

GTG ...

VQQ ...

35726 1 - 92469819 - 92469932 1 114

CTG ...

LQS ...

35728 16 + 20651802 - 20652635 3 150

GTG ...

VAR ...

35730 16 - 56691882 - 56697618 4 285

CTG ...

LTF ...

35732 16 + 90746720 - 90749408 3 285

GTG ...

VLN ...

35734 16 - 31258481 - 31260597 2 48

ATG ...

MTS ...

35736 16 - 5015528 - 5018591 3 267

CTG ...

LIL ...

35738 16 - 17859521 - 17872595 2 39

GTG ...

VRI ...

35740 16 - 32084483 - 32087312 3 264

CTG ...

LMY ...

35742 16 - 18807285 - 18810435 2 186

CTG ...

LGG ...

35745 16 + 44355446 - 44357773 3 168

TTG ...

LIR ...

35747 16 - 18807285 - 18811351 3 279

TTG ...

LWP ...

35750 1 + 85905317 - 85905406 1 90

TTG ...

LRR ...

35758 1 + 75143064 - 75143132 1 69

CTG ...

LLV ...

35796 1 - 52214474 - 52214515 1 42

TTG ...

LWG ...

35811 1 + 191822523 - 191822819 1 297

GTG ...

VMT ...

35828 1 + 45823444 - 45823515 1 72

CTG ...

LSK ...

35863 1 + 34443789 - 34443974 1 186

CTG ...

LPF ...

35946 1 - 143702549 - 143702818 1 270

CTG ...

LGG ...

35951 1 - 178330158 - 178330286 1 129

GTG ...

VEV ...

35956 17 - 33665537 - 33665593 1 57

GTG ...

VWW ...

35958 17 - 24885407 - 24885532 1 126

ATG ...

MAG ...

35961 1 + 157412891 - 157412926 1 36

CTG ...

LDQ ...

35963 17 - 24700868 - 24700927 1 60

CTG ...

LAY ...

35966 17 + 33829791 - 33829820 1 30

CTG ...

LVS ...

35969 1 + 150416079 - 150416255 1 177

CTG ...

LQD ...

35972 17 + 20955920 - 20956024 1 105

CTG ...

LAG ...

35975 17 + 28961423 - 28961467 1 45

TTG ...

LTM ...

35978 17 + 69262174 - 69262233 1 60

CTG ...

LQR ...

35981 17 + 13013463 - 13013495 1 33

TTG ...

LGL ...

35984 17 + 33843204 - 33843299 1 96

CTG ...

LGL ...

35987 17 - 33939570 - 33939608 1 39

TTG ...

LSN ...

35990 17 - 35667830 - 35667997 1 168

CTG ...

LYN ...

35993 17 + 34982647 - 34982691 1 45

GTG ...

VGK ...

35996 17 + 25048454 - 25048534 1 81

GTG ...

VNV ...

35999 1 + 135739409 - 135739462 1 54

CTG ...

LGR ...

36001 17 - 65926328 - 65926357 1 30

CTG ...

LRV ...

36004 17 - 34603391 - 34603534 1 144

GTG ...

VYM ...

36007 17 - 34030558 - 34030716 1 159

CTG ...

LIS ...

36010 17 + 35058406 - 35058453 1 48

ATG ...

MPG ...

36012 1 + 172101424 - 172101462 1 39

ATG ...

MCL ...

36015 17 + 27029889 - 27029921 1 33

CTG ...

LRR ...

36018 17 - 10216340 - 10216378 1 39

CTG ...

LLC ...

36020 17 - 34116854 - 34117006 1 153

CTG ...

LQY ...

36023 17 - 34119161 - 34119214 1 54

ATG ...

MDF ...

36026 17 - 84748957 - 84749106 1 150

TTG ...

LSF ...

36028 17 + 20960517 - 20960675 1 159

GTG ...

VIG ...

36030 17 - 6742686 - 6742808 1 123

CTG ...

LQL ...

36032 17 + 24895904 - 24896080 1 177

TTG ...

LNS ...

Previous 312 Next

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5