Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

35614 16 + 90738615 - 90746646 2 60

CTG ...

LDY ...

35616 16 + 22871078 - 22871735 2 87

CTG ...

LTE ...

35618 16 + 5235210 - 5238650 2 63

GTG ...

VYL ...

35620 16 + 17070337 - 17084602 4 267

ATG ...

MGA ...

35622 16 + 29579475 - 29586037 3 117

CTG ...

LGP ...

35624 16 - 32084483 - 32085284 2 192

TTG ...

LKS ...

35626 16 + 91372997 - 91383866 2 84

CTG ...

LRL ...

35628 16 - 4040472 - 4044618 3 171

GTG ...

VKV ...

35630 16 + 33009422 - 33012490 2 165

CTG ...

LYW ...

35632 16 + 20677733 - 20678816 3 174

GTG ...

VAP ...

35634 1 - 172068169 - 172068249 1 81

CTG ...

LVR ...

35636 16 - 17859521 - 17872670 2 114

CTG ...

LGS ...

35638 1 + 87918669 - 87918725 1 57

CTG ...

LLN ...

35640 16 - 17859521 - 17872706 3 150

CTG ...

LLP ...

35642 16 + 38347198 - 38349302 2 72

GTG ...

VMR ...

35644 16 - 17130782 - 17131682 2 93

GTG ...

VGK ...

35646 16 + 57144764 - 57146081 2 87

TTG ...

LLW ...

35648 16 - 65551046 - 65562639 3 174

TTG ...

LET ...

35650 16 - 4068282 - 4069033 3 234

TTG ...

LSF ...

35652 16 - 36046447 - 36052330 3 195

ATG ...

MDS ...

35654 16 - 17652127 - 17652856 3 285

GTG ...

VFA ...

35656 16 + 17619383 - 17620599 2 66

ATG ...

MAA ...

35659 16 - 84831395 - 84834851 3 156

GTG ...

VAA ...

35661 16 - 17859521 - 17872649 2 93

GTG ...

VVP ...

35663 16 + 58728078 - 58729463 3 33

ATG ...

MGE ...

35666 16 + 45186192 - 45187670 2 54

TTG ...

LRQ ...

35669 16 + 18070184 - 18070961 2 132

CTG ...

LEK ...

35671 16 + 13672034 - 13685070 2 54

CTG ...

LAG ...

35674 16 - 45400261 - 45408941 3 129

TTG ...

LRR ...

35677 16 + 36856406 - 36859412 3 228

TTG ...

LNM ...

35679 16 + 10170310 - 10174410 4 222

GTG ...

VQG ...

35681 16 + 22871039 - 22871735 2 126

TTG ...

LII ...

35683 16 + 23108647 - 23110067 4 288

GTG ...

VDV ...

35685 16 + 10421281 - 10421902 3 192

CTG ...

LPI ...

35687 16 + 44144906 - 44156435 2 39

TTG ...

LVM ...

35689 16 + 20102020 - 20106708 2 81

TTG ...

LPG ...

35692 16 - 96180049 - 96185857 2 159

ATG ...

MSP ...

35694 16 + 22871057 - 22871735 2 108

GTG ...

VDF ...

35696 16 + 49699488 - 49703183 2 96

CTG ...

LKL ...

35698 16 + 10170289 - 10174410 4 243

GTG ...

VWS ...

35701 1 - 36150030 - 36150155 1 126

CTG ...

LYV ...

35703 16 + 10412138 - 10420979 5 279

CTG ...

LCA ...

35705 1 - 160212679 - 160212765 1 87

CTG ...

LPA ...

35707 16 + 32900668 - 32902420 2 42

CTG ...

LYP ...

35709 16 + 37826750 - 37834962 2 168

CTG ...

LDS ...

35712 16 - 11240832 - 11253750 2 117

CTG ...

LNS ...

35714 16 + 92301290 - 92305368 2 135

TTG ...

LWE ...

35716 16 - 17859521 - 17872610 2 54

ATG ...

MAG ...

35718 16 + 23108641 - 23110067 4 294

GTG ...

VGV ...

35720 16 - 18807285 - 18810468 2 219

GTG ...

VTT ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5