Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

35502 16 - 11240832 - 11253825 2 192

GTG ...

VRT ...

35504 16 + 18812332 - 18814920 3 177

GTG ...

VAW ...

35506 16 + 5235219 - 5238650 2 54

CTG ...

LWK ...

35508 16 + 10421275 - 10421902 3 198

GTG ...

VKL ...

35510 16 + 91373006 - 91383866 2 75

ATG ...

MPR ...

35512 16 - 85025442 - 85030442 3 267

CTG ...

LGN ...

35514 16 - 31258481 - 31260585 2 36

CTG ...

LRS ...

35517 1 + 45819521 - 45819721 1 201

TTG ...

LYI ...

35519 16 - 18807285 - 18808751 2 159

ATG ...

MCT ...

35521 16 - 15862788 - 15863272 3 195

GTG ...

VRI ...

35523 1 - 171237142 - 171237180 1 39

ATG ...

MTP ...

35527 16 - 91576113 - 91581782 5 285

TTG ...

LAD ...

35530 16 + 17419421 - 17422470 2 45

CTG ...

LSR ...

35533 16 - 15848666 - 15862561 3 228

CTG ...

LHL ...

35535 16 - 17927180 - 17927436 2 183

ATG ...

MAS ...

35537 16 - 5019446 - 5021366 3 135

GTG ...

VCR ...

35539 16 + 29579427 - 29586037 3 165

TTG ...

LLL ...

35541 16 - 32084483 - 32087333 3 285

GTG ...

VVN ...

35543 16 + 22870982 - 22871735 2 183

CTG ...

LWK ...

35546 16 - 5021415 - 5026533 2 60

CTG ...

LSG ...

35548 16 + 23108593 - 23108758 2 81

ATG ...

MAA ...

35550 16 - 59613811 - 59618879 4 132

GTG ...

VNF ...

35552 1 + 172119931 - 172120083 1 153

CTG ...

LRT ...

35554 16 - 50280517 - 50331050 3 45

ATG ...

MDS ...

35557 16 + 94370965 - 94403351 2 45

GTG ...

VCE ...

35560 16 + 22870626 - 22871735 3 282

CTG ...

LVE ...

35562 1 - 181816858 - 181817004 1 147

CTG ...

LPY ...

35564 1 + 42896097 - 42896180 1 84

CTG ...

LIG ...

35566 16 + 38347201 - 38349302 2 69

ATG ...

MRA ...

35569 16 - 17528622 - 17529034 2 219

TTG ...

LSL ...

35571 16 - 17528622 - 17528968 2 153

CTG ...

LTS ...

35573 16 - 13881765 - 13887734 4 219

TTG ...

LKE ...

35575 16 - 94499000 - 94501706 3 255

ATG ...

MFP ...

35578 16 - 23114012 - 23114312 3 222

CTG ...

LLQ ...

35580 16 + 36858499 - 36859412 2 156

TTG ...

LTI ...

35583 16 - 5015528 - 5018606 3 282

ATG ...

MVE ...

35585 16 - 22436252 - 22436526 3 126

ATG ...

MLK ...

35587 16 + 29579388 - 29586037 3 204

ATG ...

MRH ...

35589 16 + 29579430 - 29586037 3 162

TTG ...

LLR ...

35591 16 + 17419430 - 17422470 2 36

ATG ...

MAA ...

35593 16 - 17859521 - 17891409 3 153

CTG ...

LSP ...

35595 16 - 22436252 - 22436508 3 108

GTG ...

VIA ...

35597 16 - 18807285 - 18810414 2 165

CTG ...

LHI ...

35599 16 - 18807285 - 18811333 3 261

ATG ...

MPC ...

35601 16 + 36858460 - 36859412 2 195

GTG ...

VEK ...

35603 16 - 18807285 - 18810504 3 255

CTG ...

LTT ...

35605 16 + 38347171 - 38349302 2 99

GTG ...

VPA ...

35608 16 - 96180049 - 96185845 2 147

GTG ...

VTS ...

35610 16 + 36856358 - 36859412 3 276

TTG ...

LQL ...

35612 16 + 18070214 - 18070961 2 102

GTG ...

VTT ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5