Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

35388 16 + 20651727 - 20652635 3 225

GTG ...

VDE ...

35390 16 - 45737595 - 45742849 2 114

GTG ...

VSF ...

35392 16 - 4769775 - 4770120 2 99

ATG ...

MSH ...

35394 16 - 59526524 - 59530452 4 297

CTG ...

LFE ...

35397 16 + 8830540 - 8831399 2 225

GTG ...

VPG ...

35399 16 - 13833702 - 13839664 4 255

CTG ...

LES ...

35402 16 - 4769775 - 4770063 2 42

GTG ...

VEP ...

35404 16 + 33009431 - 33012490 2 156

GTG ...

VKE ...

35407 16 - 65551046 - 65562573 3 108

CTG ...

LFP ...

35409 16 + 90746708 - 90749408 3 297

CTG ...

LQG ...

35411 16 + 90738615 - 90747403 2 84

CTG ...

LDY ...

35414 16 + 49699425 - 49703183 2 159

GTG ...

VER ...

35416 16 + 20677751 - 20678816 3 156

TTG ...

LMN ...

35418 1 + 79776181 - 79776315 1 135

TTG ...

LAP ...

35420 16 + 29579376 - 29586037 3 216

TTG ...

LRK ...

35423 16 + 49699479 - 49703183 2 105

GTG ...

VEK ...

35425 16 - 4040123 - 4040451 3 195

CTG ...

LLA ...

35427 16 + 10170265 - 10174410 4 267

CTG ...

LQQ ...

35429 16 + 32900677 - 32902420 2 33

TTG ...

LTI ...

35431 16 - 45400261 - 45408893 3 81

GTG ...

VSS ...

35433 16 - 22436252 - 22436493 3 93

TTG ...

LEA ...

35435 16 + 49699422 - 49703183 2 162

GTG ...

VVE ...

35437 16 - 32092475 - 32099524 2 60

CTG ...

LVG ...

35440 16 - 84829742 - 84831405 2 129

GTG ...

VAF ...

35442 16 - 32092475 - 32099545 2 81

CTG ...

LLL ...

35444 16 - 10963327 - 10966445 2 108

CTG ...

LSP ...

35446 16 + 91372976 - 91383866 2 105

CTG ...

LLA ...

35448 16 + 22871003 - 22871735 2 162

CTG ...

LPN ...

35450 16 - 44013031 - 44027894 2 75

CTG ...

LVR ...

35452 16 - 13883670 - 13887734 3 123

TTG ...

LKE ...

35455 16 - 15862788 - 15863248 3 171

CTG ...

LFR ...

35458 16 - 84829742 - 84831432 2 156

TTG ...

LKR ...

35460 1 - 36682890 - 36682958 1 69

GTG ...

VAA ...

35462 1 + 170647858 - 170647893 1 36

TTG ...

LCC ...

35466 16 - 18781898 - 18784905 3 165

GTG ...

VYL ...

35468 16 - 11222747 - 11224466 2 54

GTG ...

VIL ...

35470 16 + 90738639 - 90746646 2 36

GTG ...

VDE ...

35472 16 + 29579532 - 29586037 3 60

CTG ...

LAG ...

35474 16 + 91670467 - 91671998 3 276

GTG ...

VDI ...

35477 16 + 44355455 - 44357773 3 159

GTG ...

VNR ...

35480 16 - 4770672 - 4789856 2 90

CTG ...

LAS ...

35482 16 - 13836265 - 13839279 3 108

GTG ...

VET ...

35484 16 + 20102032 - 20106708 2 69

TTG ...

LVK ...

35487 16 - 84831395 - 84834815 3 120

GTG ...

VQV ...

35489 16 + 29579421 - 29586037 3 171

ATG ...

MPL ...

35491 16 - 17652127 - 17652862 3 291

GTG ...

VLV ...

35493 16 + 45186201 - 45187670 2 45

TTG ...

LQK ...

35496 16 + 18812317 - 18814920 3 192

CTG ...

LGF ...

35498 16 - 17130782 - 17131751 2 162

ATG ...

MPI ...

35500 16 - 17859521 - 17872613 2 57

GTG ...

VMA ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5