Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

35271 16 - 18807285 - 18810420 2 171

TTG ...

LKL ...

35273 16 + 10417670 - 10420979 3 99

CTG ...

LDI ...

35276 16 - 45400261 - 45408944 3 132

GTG ...

VLR ...

35278 16 - 84831395 - 84834839 3 144

GTG ...

VTL ...

35281 16 - 85103284 - 85120618 2 141

ATG ...

MCR ...

35283 16 + 18070145 - 18070961 2 171

CTG ...

LEL ...

35285 16 + 92301308 - 92305368 2 117

GTG ...

VSS ...

35287 16 - 11240832 - 11253696 2 63

CTG ...

LAQ ...

35289 16 + 22870614 - 22871735 3 294

GTG ...

VTV ...

35292 16 - 44013031 - 44027885 2 66

CTG ...

LAG ...

35294 16 - 96180049 - 96185923 2 225

ATG ...

MKY ...

35297 16 - 16792567 - 16829204 3 231

GTG ...

VLQ ...

35300 16 + 18825763 - 18826255 2 57

ATG ...

MLP ...

35302 16 + 29579433 - 29586037 3 159

CTG ...

LRA ...

35304 1 + 42896145 - 42896180 1 36

GTG ...

VEK ...

35306 16 - 23114012 - 23114309 3 219

TTG ...

LQN ...

35309 16 + 8830636 - 8831399 2 129

GTG ...

VAS ...

35311 16 - 16792567 - 16829201 3 228

CTG ...

LQG ...

35313 16 - 17859521 - 17891442 3 186

GTG ...

VPS ...

35315 16 - 36046447 - 36049908 2 108

TTG ...

LRR ...

35317 16 - 18807285 - 18810405 2 156

TTG ...

LNI ...

35319 16 - 84831395 - 84834833 3 138

CTG ...

LAA ...

35321 1 + 191822541 - 191822819 1 279

CTG ...

LAL ...

35323 16 - 13836265 - 13839297 3 126

GTG ...

VDV ...

35326 16 + 22870638 - 22871735 3 270

CTG ...

LVG ...

35328 16 + 23108662 - 23110067 4 273

TTG ...

LER ...

35330 16 - 17528622 - 17528977 2 162

CTG ...

LAC ...

35333 16 - 16792567 - 16829162 3 240

TTG ...

LAS ...

35335 16 - 17130782 - 17131712 2 123

GTG ...

VGA ...

35339 16 + 18812356 - 18814920 3 153

CTG ...

LWV ...

35341 16 + 10170256 - 10174410 4 276

CTG ...

LPS ...

35343 16 - 18807285 - 18808742 2 150

ATG ...

MTL ...

35346 16 - 22436252 - 22436523 3 123

CTG ...

LKP ...

35349 16 + 49699464 - 49703183 2 120

GTG ...

VME ...

35352 16 - 5019446 - 5021384 3 153

GTG ...

VTS ...

35354 1 - 23846449 - 23846517 1 69

GTG ...

VQV ...

35357 16 + 20675769 - 20678816 4 282

GTG ...

VQP ...

35360 16 + 8830516 - 8831399 2 249

TTG ...

LVL ...

35362 16 + 5235216 - 5238650 2 57

TTG ...

LLW ...

35364 16 - 17528622 - 17528989 2 174

ATG ...

MVI ...

35366 16 + 91372967 - 91383866 2 114

CTG ...

LPP ...

35368 1 - 161093677 - 161093775 1 99

GTG ...

VVN ...

35370 16 + 32900699 - 32902484 2 75

GTG ...

VSG ...

35373 16 + 22870668 - 22871735 3 240

CTG ...

LDG ...

35375 16 + 10170279 - 10170476 2 108

TTG ...

LVW ...

35377 16 - 85025442 - 85030475 3 300

CTG ...

LCA ...

35379 16 + 90738534 - 90746646 2 141

CTG ...

LTD ...

35382 16 + 17035649 - 17038430 2 120

ATG ...

MPI ...

35384 16 + 92058429 - 92076733 2 66

CTG ...

LGD ...

35386 16 - 17652127 - 17652859 3 288

TTG ...

LVF ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5