Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

35156 16 + 20682102 - 20682272 1 171

CTG ...

LMK ...

35158 16 + 20717875 - 20717958 1 84

GTG ...

VVA ...

35160 16 + 5242500 - 5242607 1 108

CTG ...

LGV ...

35162 16 + 23110055 - 23110138 1 84

ATG ...

MFE ...

35164 1 - 135430260 - 135430394 1 135

CTG ...

LPG ...

35166 16 + 35000399 - 35000560 1 162

ATG ...

MTP ...

35168 16 + 38564258 - 38564305 1 48

TTG ...

LVG ...

35171 16 + 45555648 - 45555845 1 198

CTG ...

LLM ...

35173 16 - 84831325 - 84831405 1 81

GTG ...

VAF ...

35175 1 + 160906497 - 160906673 1 177

ATG ...

MAP ...

35177 16 + 29618168 - 29618299 1 132

GTG ...

VIE ...

35179 16 + 36020710 - 36020817 1 108

TTG ...

LTM ...

35181 16 - 8424946 - 8424978 1 33

ATG ...

MEG ...

35183 16 + 29579520 - 29586037 3 72

GTG ...

VWS ...

35186 16 - 18781898 - 18784899 3 159

CTG ...

LFC ...

35188 16 - 16792567 - 16829192 3 270

ATG ...

MAK ...

35191 16 - 32084483 - 32085326 2 234

TTG ...

LKC ...

35193 16 - 4040123 - 4040448 3 192

TTG ...

LAS ...

35196 1 + 155174082 - 155174147 1 66

CTG ...

LDH ...

35199 16 - 10963327 - 10966451 2 114

CTG ...

LCL ...

35202 1 - 165634299 - 165634334 1 36

GTG ...

VVG ...

35204 16 + 17070328 - 17084602 4 276

CTG ...

LGR ...

35207 16 + 91373003 - 91383866 2 78

CTG ...

LMP ...

35210 16 - 4770672 - 4789874 2 108

CTG ...

LQI ...

35213 1 + 85903086 - 85903154 1 69

TTG ...

LYC ...

35215 16 + 18825760 - 18826255 2 60

TTG ...

LML ...

35217 16 - 4040472 - 4044098 2 165

GTG ...

VTF ...

35219 16 - 5015528 - 5018603 3 279

GTG ...

VEV ...

35221 16 - 5015528 - 5018597 3 273

GTG ...

VSL ...

35223 16 - 5015528 - 5018546 3 222

ATG ...

MNG ...

35225 16 - 45400261 - 45408896 3 84

CTG ...

LVS ...

35228 16 - 17859521 - 17872661 2 105

TTG ...

LHV ...

35231 1 + 86592324 - 86592389 1 66

TTG ...

LLN ...

35233 16 + 44144912 - 44156435 2 33

ATG ...

MSI ...

35235 1 - 172075401 - 172075463 1 63

TTG ...

LTD ...

35237 16 - 59613811 - 59618870 4 123

GTG ...

VCG ...

35239 16 - 5021444 - 5029426 4 198

TTG ...

LCF ...

35241 1 + 134425929 - 134426099 1 171

CTG ...

LGI ...

35243 16 + 33057518 - 33058689 2 36

GTG ...

VLM ...

35245 16 - 84831395 - 84833826 2 120

ATG ...

MLV ...

35247 16 - 91930356 - 91931545 2 75

CTG ...

LQR ...

35250 16 + 8830528 - 8831399 2 237

GTG ...

VGA ...

35252 16 + 10421296 - 10421902 3 177

GTG ...

VVE ...

35254 16 - 17927180 - 17927580 3 249

ATG ...

MNE ...

35257 16 + 23111878 - 23113210 2 63

GTG ...

VKT ...

35259 16 + 64852165 - 64852801 2 75

CTG ...

LAR ...

35261 16 + 18070151 - 18070961 2 165

CTG ...

LDR ...

35264 16 + 10170291 - 10170476 2 96

GTG ...

VVQ ...

35266 16 - 15848666 - 15862555 3 222

TTG ...

LFP ...

35269 16 - 17927180 - 17927448 2 195

CTG ...

LSA ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5