Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

35050 16 - 18807285 - 18807347 1 63

ATG ...

MKI ...

35052 16 + 38347126 - 38347161 1 36

CTG ...

LPR ...

35054 16 + 92058429 - 92058488 1 60

CTG ...

LGD ...

35056 1 + 153433325 - 153433393 1 69

GTG ...

VYP ...

35058 1 + 38032303 - 38032392 1 90

TTG ...

LPK ...

35060 16 + 38562864 - 38562893 1 30

ATG ...

MEA ...

35063 16 + 23110085 - 23110138 1 54

CTG ...

LKP ...

35065 16 - 18807285 - 18807383 1 99

CTG ...

LPT ...

35067 16 + 22870905 - 22871042 1 138

CTG ...

LSC ...

35069 16 + 20559944 - 20560051 1 108

TTG ...

LGR ...

35071 16 - 33016938 - 33017039 1 102

GTG ...

VVR ...

35073 16 + 18249957 - 18250037 1 81

CTG ...

LWT ...

35075 16 + 20680890 - 20681102 1 213

GTG ...

VDP ...

35077 16 - 4768538 - 4768597 1 60

GTG ...

VTH ...

35079 16 + 20559345 - 20559383 1 39

CTG ...

LSP ...

35081 16 - 20605555 - 20605641 1 87

CTG ...

LCH ...

35083 16 + 58732643 - 58732723 1 81

TTG ...

LIG ...

35085 16 - 85030228 - 85030293 1 66

ATG ...

MPI ...

35087 16 + 4936955 - 4937008 1 54

CTG ...

LLS ...

35089 16 + 35022530 - 35022625 1 96

GTG ...

VAE ...

35091 16 + 34921629 - 34921658 1 30

ATG ...

MVM ...

35093 1 - 135304490 - 135304522 1 33

TTG ...

LGP ...

35095 16 - 17573277 - 17573369 1 93

GTG ...

VVF ...

35097 16 + 37815742 - 37815843 1 102

GTG ...

VFC ...

35099 1 - 171145778 - 171145810 1 33

ATG ...

MSA ...

35101 16 - 45408852 - 45408893 1 42

GTG ...

VSS ...

35103 16 - 4043949 - 4044065 1 117

GTG ...

VTV ...

35105 16 - 15862788 - 15862895 1 108

GTG ...

VLH ...

35107 16 + 18814898 - 18814930 1 33

CTG ...

LLL ...

35109 16 - 31274994 - 31275056 1 63

CTG ...

LEG ...

35112 16 - 4065218 - 4065325 1 108

CTG ...

LRH ...

35114 16 - 85024849 - 85024929 1 81

TTG ...

LKP ...

35116 16 + 20559971 - 20560051 1 81

CTG ...

LAM ...

35118 16 + 58732676 - 58732723 1 48

CTG ...

LYP ...

35120 16 + 44140006 - 44140107 1 102

TTG ...

LSG ...

35122 16 - 17925813 - 17925887 1 75

CTG ...

LDV ...

35124 16 - 11230556 - 11230606 1 51

TTG ...

LAS ...

35126 16 + 18249945 - 18250037 1 93

GTG ...

VVT ...

35128 16 + 3923876 - 3923977 1 102

GTG ...

VAS ...

35130 16 - 11224416 - 11224466 1 51

GTG ...

VIL ...

35133 16 - 8424946 - 8425062 1 117

CTG ...

LNW ...

35135 16 - 44027817 - 44027894 1 78

CTG ...

LVR ...

35138 16 - 14317290 - 14317328 1 39

TTG ...

LKN ...

35140 16 + 58456306 - 58456416 1 111

GTG ...

VLQ ...

35143 16 + 34921623 - 34921658 1 36

GTG ...

VLM ...

35145 16 + 32467153 - 32467224 1 72

ATG ...

MCM ...

35147 16 + 4648618 - 4648776 1 159

GTG ...

VPS ...

35149 16 - 4987454 - 4987693 1 240

CTG ...

LWP ...

35152 16 + 13685088 - 13685132 1 45

CTG ...

LSL ...

35154 16 + 22014160 - 22014195 1 36

ATG ...

MLP ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5