Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

34939 16 + 57121746 - 57121883 1 138

CTG ...

LLS ...

34941 16 - 4768538 - 4768630 1 93

TTG ...

LIP ...

34943 16 - 85103202 - 85103249 1 48

GTG ...

VQD ...

34945 16 + 38347166 - 38347201 1 36

CTG ...

LLC ...

34947 16 + 17640879 - 17641085 1 207

CTG ...

LEP ...

34949 16 + 17625768 - 17625893 1 126

CTG ...

LDG ...

34951 16 + 32422882 - 32422935 1 54

CTG ...

LNI ...

34953 16 - 4043949 - 4044098 1 150

GTG ...

VTF ...

34956 16 + 18825760 - 18825819 1 60

TTG ...

LML ...

34958 16 + 36829010 - 36829066 1 57

CTG ...

LEA ...

34960 16 - 11199381 - 11199479 1 99

GTG ...

VSV ...

34962 16 + 22866925 - 22867005 1 81

TTG ...

LET ...

34964 16 + 17638553 - 17638651 1 99

CTG ...

LHA ...

34966 16 - 4987454 - 4987573 1 120

CTG ...

LPR ...

34968 16 + 32615363 - 32615398 1 36

TTG ...

LNS ...

34970 1 - 93725153 - 93725293 1 141

GTG ...

VEP ...

34972 1 - 178332143 - 178332247 1 105

ATG ...

MFS ...

34974 16 - 32041464 - 32041511 1 48

CTG ...

LLL ...

34976 16 + 29620477 - 29620551 1 75

GTG ...

VKE ...

34978 16 + 32891325 - 32891381 1 57

ATG ...

MEL ...

34980 16 - 84831395 - 84831577 1 183

TTG ...

LGS ...

34982 16 + 92111896 - 92111925 1 30

CTG ...

LYS ...

34984 16 + 8646227 - 8646268 1 42

CTG ...

LSY ...

34987 16 - 4768741 - 4768848 1 108

GTG ...

VQT ...

34989 16 + 66657148 - 66657201 1 54

ATG ...

MST ...

34991 16 + 32891343 - 32891381 1 39

TTG ...

LQP ...

34994 16 + 17640942 - 17641085 1 144

CTG ...

LSP ...

34997 16 - 17574911 - 17575069 1 159

GTG ...

VLT ...

34999 16 + 91485290 - 91485319 1 30

GTG ...

VLL ...

35002 1 + 191826314 - 191826388 1 75

TTG ...

LND ...

35004 16 + 84812925 - 84813140 1 216

GTG ...

VPT ...

35007 1 + 172082847 - 172082891 1 45

TTG ...

LGV ...

35009 16 - 22436434 - 22436469 1 36

GTG ...

VIS ...

35011 16 + 36829034 - 36829066 1 33

TTG ...

LGL ...

35015 1 + 134406346 - 134406486 1 141

CTG ...

LLT ...

35017 16 - 4065218 - 4065292 1 75

CTG ...

LPE ...

35019 16 + 18812356 - 18812421 1 66

CTG ...

LWV ...

35021 16 + 4649913 - 4650212 1 300

CTG ...

LPL ...

35023 16 + 4649937 - 4650212 1 276

CTG ...

LAA ...

35025 16 - 4987454 - 4987702 1 249

CTG ...

LGP ...

35027 1 + 172118889 - 172118981 1 93

CTG ...

LFL ...

35030 16 + 20652245 - 20652304 1 60

CTG ...

LRR ...

35032 16 - 15862788 - 15862901 1 114

CTG ...

LVV ...

35034 16 + 91407716 - 91407745 1 30

CTG ...

LTF ...

35037 1 - 181001795 - 181001890 1 96

ATG ...

MGG ...

35040 1 + 150412903 - 150413121 1 219

TTG ...

LME ...

35042 16 - 16358853 - 16358903 1 51

GTG ...

VAC ...

35044 16 - 20302205 - 20302321 1 117

TTG ...

LQG ...

35046 16 - 5036915 - 5036956 1 42

TTG ...

LKS ...

35048 16 + 31948692 - 31948781 1 90

GTG ...

VEL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5