Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

34835 16 - 8701958 - 8702041 1 84

TTG ...

LPP ...

34837 16 + 64852806 - 64852883 1 78

ATG ...

MTS ...

34839 16 + 90222859 - 90222906 1 48

ATG ...

MGT ...

34841 16 + 23110043 - 23110138 1 96

TTG ...

LEE ...

34843 1 + 156059451 - 156059516 1 66

ATG ...

MSL ...

34846 16 + 20558749 - 20558850 1 102

GTG ...

VDF ...

34848 16 + 35022518 - 35022625 1 108

ATG ...

MGA ...

34850 16 - 85024849 - 85024878 1 30

CTG ...

LHC ...

34852 16 - 30582527 - 30582607 1 81

CTG ...

LLS ...

34854 16 - 15862485 - 15862517 1 33

ATG ...

MWL ...

34856 16 - 84831395 - 84831541 1 147

ATG ...

MKS ...

34858 16 + 58732619 - 58732723 1 105

TTG ...

LGL ...

34860 16 - 84831351 - 84831407 1 57

CTG ...

LWP ...

34862 16 + 92111827 - 92111925 1 99

GTG ...

VKH ...

34864 16 + 34921608 - 34921658 1 51

GTG ...

VVE ...

34866 16 + 22042984 - 22043025 1 42

ATG ...

MKA ...

34868 16 + 17626478 - 17626552 1 75

CTG ...

LYH ...

34870 16 + 8830146 - 8830235 1 90

GTG ...

VGS ...

34872 16 - 17842521 - 17842709 1 189

TTG ...

LPR ...

34874 16 + 20672812 - 20672874 1 63

ATG ...

MVV ...

34876 16 + 4684188 - 4684388 1 201

CTG ...

LPA ...

34878 16 - 52452560 - 52452592 1 33

GTG ...

VCL ...

34881 1 - 86350750 - 86350944 1 195

TTG ...

LDW ...

34883 16 + 92111782 - 92111925 1 144

CTG ...

LEH ...

34885 16 + 36829019 - 36829066 1 48

CTG ...

LKS ...

34888 16 + 35000423 - 35000560 1 138

CTG ...

LST ...

34890 16 + 5242533 - 5242607 1 75

CTG ...

LDL ...

34892 16 + 17640984 - 17641085 1 102

GTG ...

VKS ...

34894 16 + 36849638 - 36849745 1 108

CTG ...

LLN ...

34896 16 - 4768741 - 4768773 1 33

GTG ...

VLG ...

34898 1 + 84896585 - 84896716 1 132

CTG ...

LLL ...

34900 16 + 4915760 - 4915789 1 30

TTG ...

LTW ...

34902 16 - 84831325 - 84831486 1 162

CTG ...

LQR ...

34904 16 - 20605555 - 20605608 1 54

CTG ...

LSP ...

34906 16 - 4768741 - 4768785 1 45

CTG ...

LMN ...

34908 16 - 5036217 - 5036318 1 102

CTG ...

LQT ...

34910 16 - 4768538 - 4768642 1 105

CTG ...

LGC ...

34912 1 - 93478747 - 93478788 1 42

ATG ...

MAS ...

34915 16 - 59639027 - 59639131 1 105

CTG ...

LML ...

34917 16 + 17638574 - 17638651 1 78

CTG ...

LKP ...

34919 16 - 11199381 - 11199473 1 93

GTG ...

VNL ...

34921 16 + 4684173 - 4684388 1 216

GTG ...

VGT ...

34923 16 + 22866908 - 22866994 1 87

CTG ...

LYP ...

34925 16 + 20660011 - 20660142 1 132

TTG ...

LTL ...

34927 1 + 79778066 - 79778341 1 276

CTG ...

LSF ...

34929 16 + 4936910 - 4937008 1 99

ATG ...

MET ...

34931 16 - 17927142 - 17927198 1 57

GTG ...

VAE ...

34933 16 + 23110029 - 23110067 1 39

TTG ...

LSC ...

34935 16 + 32895161 - 32895190 1 30

TTG ...

LLF ...

34937 16 + 5236359 - 5236472 1 114

GTG ...

VGC ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5